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comparison macros.xml @ 5:49ed010c7eef draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_rmdup commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6
author iuc
date Mon, 29 Jul 2019 08:40:14 -0400
parents c2549832fb33
children
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4:c2549832fb33 5:49ed010c7eef
4 <requirement type="package" version="1.3.1">samtools</requirement> 4 <requirement type="package" version="1.3.1">samtools</requirement>
5 <yield/> 5 <yield/>
6 </requirements> 6 </requirements>
7 </xml> 7 </xml>
8 <token name="@TOOL_VERSION@">1.3.1</token> 8 <token name="@TOOL_VERSION@">1.3.1</token>
9 <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
10 <xml name="filter_options">
11 <option value="1">Read is paired</option>
12 <option value="2">Read is mapped in a proper pair</option>
13 <option value="4">The read is unmapped</option>
14 <option value="8">The mate is unmapped</option>
15 <option value="16">Read strand</option>
16 <option value="32">Mate strand</option>
17 <option value="48">Read is the first in a pair</option>
18 <option value="64">Read is the second in a pair</option>
19 <option value="256">The alignment or this read is not primary</option>
20 <option value="512">The read fails platform/vendor quality checks</option>
21 <option value="768">The read is a PCR or optical duplicate</option>
22 <option value="1024">Supplementary alignment</option>
23 </xml>
9 <xml name="citations"> 24 <xml name="citations">
10 <citations> 25 <citations>
11 <citation type="bibtex"> 26 <citation type="bibtex">
12 @misc{SAM_def, 27 @misc{SAM_def,
13 title={Definition of SAM/BAM format}, 28 title={Definition of SAM/BAM format},