Mercurial > repos > devteam > samtools_flagstat

comparison test-data/samtools_flagstat_out1.txt @ 2:728e2ed819a1 draft

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Uploaded tool version 1.0.2, updated for samtools 1.0.
author devteam
date Wed, 24 Sep 2014 11:26:48 -0400
parents 1bbde47ebd2a
children 480404be9626
comparison
equal deleted inserted replaced
1:f92f13ccee76 2:728e2ed819a1
1 10 + 0 in total (QC-passed reads + QC-failed reads) 1 10 + 0 in total (QC-passed reads + QC-failed reads)
2 0 + 0 duplicates 2 0 + 0 duplicates
3 10 + 0 mapped (100.00%:nan%) 3 10 + 0 mapped (100.00%:-nan%)
4 0 + 0 paired in sequencing 4 0 + 0 paired in sequencing
5 0 + 0 read1 5 0 + 0 read1
6 0 + 0 read2 6 0 + 0 read2
7 0 + 0 properly paired (nan%:nan%) 7 0 + 0 properly paired (-nan%:-nan%)
8 0 + 0 with itself and mate mapped 8 0 + 0 with itself and mate mapped
9 0 + 0 singletons (nan%:nan%) 9 0 + 0 singletons (-nan%:-nan%)
10 0 + 0 with mate mapped to a different chr 10 0 + 0 with mate mapped to a different chr
11 0 + 0 with mate mapped to a different chr (mapQ>=5) 11 0 + 0 with mate mapped to a different chr (mapQ>=5)