Mercurial > repos > devteam > samtools_flagstat

comparison samtools_flagstat.xml @ 9:5fbe9dcaef98 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 558d30ff047fe2f62658e8b57e27ebe8db77ede1"
author iuc
date Fri, 06 Sep 2019 11:21:12 -0400
parents 5fd05c7b42f8
children 9b44224f5a76
comparison
equal deleted inserted replaced
8:5fd05c7b42f8 9:5fbe9dcaef98
1 <tool id="samtools_flagstat" name="Samtools flagstat" version="2.0.2"> 1 <tool id="samtools_flagstat" name="Samtools flagstat" version="2.0.3">
2 <description>tabulate descriptive stats for BAM datset</description> 2 <description>tabulate descriptive stats for BAM datset</description>
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
43 0 + 0 properly paired (0.00%:nan%) 43 0 + 0 properly paired (0.00%:nan%)
44 0 + 0 with itself and mate mapped 44 0 + 0 with itself and mate mapped
45 25 + 0 singletons (12.50%:nan%) 45 25 + 0 singletons (12.50%:nan%)
46 0 + 0 with mate mapped to a different chr 46 0 + 0 with mate mapped to a different chr
47 0 + 0 with mate mapped to a different chr (mapQ>=5) 47 0 + 0 with mate mapped to a different chr (mapQ>=5)
48
49 The results of samtools flagstat can be visualized with MultiQC.
48 ]]></help> 50 ]]></help>
49 <expand macro="citations"/> 51 <expand macro="citations"/>
50 </tool> 52 </tool>