Mercurial > repos > devteam > samtools_flagstat
comparison samtools_flagstat.xml @ 7:5d3100bf5357 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 70b38ebad0d0936f102e3e7cb70f1060347ea8c4
| author | iuc |
|---|---|
| date | Thu, 27 Sep 2018 08:57:38 -0400 |
| parents | 28eb6a47be96 |
| children | 5fd05c7b42f8 |
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| 6:28eb6a47be96 | 7:5d3100bf5357 |
|---|---|
| 1 <tool id="samtools_flagstat" name="Flagstat" version="2.0.1"> | 1 <tool id="samtools_flagstat" name="Samtools flagstat" version="2.0.2"> |
| 2 <description>tabulate descriptive stats for BAM datset</description> | 2 <description>tabulate descriptive stats for BAM datset</description> |
| 3 | 3 |
| 4 <macros> | 4 <macros> |
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 11 <command><![CDATA[ | 11 <command><![CDATA[ |
| 12 samtools flagstat '$input1' > '$output1' | 12 samtools flagstat '$input1' > '$output1' |
| 13 ]]></command> | 13 ]]></command> |
| 14 | 14 |
| 15 <inputs> | 15 <inputs> |
| 16 <param name="input1" type="data" format="bam" label="BAM File to report statistics of" /> | 16 <param name="input1" type="data" format="sam,bam,cram" label="BAM File to report statistics of" /> |
| 17 </inputs> | 17 </inputs> |
| 18 | 18 |
| 19 <outputs> | 19 <outputs> |
| 20 <data name="output1" format="txt" /> | 20 <data name="output1" format="txt" /> |
| 21 </outputs> | 21 </outputs> |