Mercurial > repos > devteam > samtools_flagstat

comparison test-data/samtools_flagstat_out1.txt @ 6:28eb6a47be96 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
author iuc
date Tue, 09 May 2017 11:16:36 -0400
parents 10b658bef71a
children 9b44224f5a76
comparison
equal deleted inserted replaced
5:7b6dcfbdc6a9 6:28eb6a47be96
1 200 + 0 in total (QC-passed reads + QC-failed reads) 1 200 + 0 in total (QC-passed reads + QC-failed reads)
2 0 + 0 secondary 2 0 + 0 secondary
3 0 + 0 supplementary 3 0 + 0 supplementary
4 0 + 0 duplicates 4 0 + 0 duplicates
5 25 + 0 mapped (12.50%:nan%) 5 25 + 0 mapped (12.50% : N/A)
6 200 + 0 paired in sequencing 6 200 + 0 paired in sequencing
7 100 + 0 read1 7 100 + 0 read1
8 100 + 0 read2 8 100 + 0 read2
9 0 + 0 properly paired (0.00%:nan%) 9 0 + 0 properly paired (0.00% : N/A)
10 0 + 0 with itself and mate mapped 10 0 + 0 with itself and mate mapped
11 25 + 0 singletons (12.50%:nan%) 11 25 + 0 singletons (12.50% : N/A)
12 0 + 0 with mate mapped to a different chr 12 0 + 0 with mate mapped to a different chr
13 0 + 0 with mate mapped to a different chr (mapQ>=5) 13 0 + 0 with mate mapped to a different chr (mapQ>=5)