Mercurial > repos > devteam > samtools_flagstat

comparison test-data/samtools_flagstat_out1.txt @ 4:10b658bef71a draft

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planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:54:34 -0400
parents 480404be9626
children 28eb6a47be96
comparison
equal deleted inserted replaced
3:480404be9626 4:10b658bef71a
1 10 + 0 in total (QC-passed reads + QC-failed reads) 1 200 + 0 in total (QC-passed reads + QC-failed reads)
2 0 + 0 secondary 2 0 + 0 secondary
3 0 + 0 supplimentary 3 0 + 0 supplementary
4 0 + 0 duplicates 4 0 + 0 duplicates
5 10 + 0 mapped (100.00%:-nan%) 5 25 + 0 mapped (12.50%:nan%)
6 0 + 0 paired in sequencing 6 200 + 0 paired in sequencing
7 0 + 0 read1 7 100 + 0 read1
8 0 + 0 read2 8 100 + 0 read2
9 0 + 0 properly paired (-nan%:-nan%) 9 0 + 0 properly paired (0.00%:nan%)
10 0 + 0 with itself and mate mapped 10 0 + 0 with itself and mate mapped
11 0 + 0 singletons (-nan%:-nan%) 11 25 + 0 singletons (12.50%:nan%)
12 0 + 0 with mate mapped to a different chr 12 0 + 0 with mate mapped to a different chr
13 0 + 0 with mate mapped to a different chr (mapQ>=5) 13 0 + 0 with mate mapped to a different chr (mapQ>=5)