Mercurial > repos > devteam > quality_filter
comparison quality_filter.xml @ 1:0c48b354dcfe draft default tip
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
| author | devteam |
|---|---|
| date | Tue, 13 Oct 2015 12:28:59 -0400 |
| parents | 5da8dce9fd62 |
| children |
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| 0:5da8dce9fd62 | 1:0c48b354dcfe |
|---|---|
| 32 <param name="mask_species" type="select" label="Mask Species" display="checkboxes" multiple="true"> | 32 <param name="mask_species" type="select" label="Mask Species" display="checkboxes" multiple="true"> |
| 33 <options> | 33 <options> |
| 34 <filter type="data_meta" ref="input" key="species" /> | 34 <filter type="data_meta" ref="input" key="species" /> |
| 35 </options> | 35 </options> |
| 36 </param> | 36 </param> |
| 37 <param name="score" size="10" type="integer" value="20" label="Quality score cut-off" help="Cut-off value of 20 means mask all nucleotides having quality score less than or equal to 20"/> | 37 <param name="score" type="integer" value="20" label="Quality score cut-off" help="Cut-off value of 20 means mask all nucleotides having quality score less than or equal to 20"/> |
| 38 <param name="mask_char" size="5" type="select" label="Mask character"> | 38 <param name="mask_char" type="select" label="Mask character"> |
| 39 <option value="0" selected="true">#</option> | 39 <option value="0" selected="true">#</option> |
| 40 <option value="1">$</option> | 40 <option value="1">$</option> |
| 41 <option value="2">^</option> | 41 <option value="2">^</option> |
| 42 <option value="3">*</option> | 42 <option value="3">*</option> |
| 43 <option value="4">?</option> | 43 <option value="4">?</option> |
| 51 <option value="3">Corresponding column + neighbors on both sides</option> | 51 <option value="3">Corresponding column + neighbors on both sides</option> |
| 52 </param> | 52 </param> |
| 53 <when value="0"> | 53 <when value="0"> |
| 54 </when> | 54 </when> |
| 55 <when value="1"> | 55 <when value="1"> |
| 56 <param name="length" size="10" type="integer" value="2" label="Number of right-side neighbors"/> | 56 <param name="length" type="integer" value="2" label="Number of right-side neighbors"/> |
| 57 </when> | 57 </when> |
| 58 <when value="2"> | 58 <when value="2"> |
| 59 <param name="length" size="10" type="integer" value="2" label="Number of left-side neighbors"/> | 59 <param name="length" type="integer" value="2" label="Number of left-side neighbors"/> |
| 60 </when> | 60 </when> |
| 61 <when value="3"> | 61 <when value="3"> |
| 62 <param name="lengthr" size="10" type="integer" value="2" label="Number of neighbors on right-side" /> | 62 <param name="lengthr" type="integer" value="2" label="Number of neighbors on right-side" /> |
| 63 <param name="lengthl" size="10" type="integer" value="2" label="Number of neighbors on left-side" /> | 63 <param name="lengthl" type="integer" value="2" label="Number of neighbors on left-side" /> |
| 64 </when> | 64 </when> |
| 65 </conditional> | 65 </conditional> |
| 66 </inputs> | 66 </inputs> |
| 67 <outputs> | 67 <outputs> |
| 68 <data format="maf" name="out_file1" metadata_source="input"/> | 68 <data format="maf" name="out_file1" metadata_source="input"/> |