Mercurial > repos > devteam > picard1106

diff cleansamwrapper.sh @ 0:8b335563c71a draft

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author devteam
date Thu, 23 Jan 2014 19:30:56 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cleansamwrapper.sh	Thu Jan 23 19:30:56 2014 -0500
@@ -0,0 +1,2 @@
+java -jar $JAVA_JAR_PATH/CleanSam.jar QUIET=True INPUT=$1 OUTPUT=$2.sam
+mv $2.sam $2
\ No newline at end of file