Mercurial > repos > devteam > picard1106

annotate normalizefasta_wrapper.sh @ 117:5fe20cda6a51 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author devteam
date Tue, 25 Feb 2014 18:54:45 -0500
parents 4109d3f92a8b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
90
4109d3f92a8b Uploaded
devteam
parents:
diff changeset
1 #!/bin/bash
4109d3f92a8b Uploaded
devteam
parents:
diff changeset
2 cp $2 $2.fasta
4109d3f92a8b Uploaded
devteam
parents:
diff changeset
3 eval java -jar $JAVA_JAR_PATH/$1 INPUT=$2.fasta ${*:3}
4109d3f92a8b Uploaded
devteam
parents:
diff changeset
4 rm -f $2.fasta