Mercurial > repos > devteam > picard

diff picard_AddCommentsToBam.xml @ 8:e417b1d6288d draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit bf94a1505c131fb3f67c867b6e1d886780efa42e
author devteam
date Tue, 06 Dec 2016 10:04:26 -0500
parents 08f69add4d06
children 41b8d087a2d2
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line diff
--- a/picard_AddCommentsToBam.xml	Sun Nov 27 15:11:36 2016 -0500
+++ b/picard_AddCommentsToBam.xml	Tue Dec 06 10:04:26 2016 -0500
@@ -6,9 +6,10 @@
   <expand macro="requirements" />
   <command detect_errors="exit_code"><![CDATA[
     @java_options@
+    @symlink_element_identifier@
     picard
       AddCommentsToBam
-      INPUT="${inputFile}"
+      INPUT='$inputFile.element_identifier'
       OUTPUT="${outFile}"
       #for $element in $comments:
         COMMENT="${element.comment}"