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comparison tool_dependencies.xml @ 1:ab5e8beab4fe draft

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Uploaded corrected tool dependency definition.
author devteam
date Tue, 17 Dec 2013 16:12:31 -0500
parents ff4ec13e496e
children 52fdfc45590a
comparison
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0:ff4ec13e496e 1:ab5e8beab4fe
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="picard" version="1.56.0"> 3 <package name="picard" version="1.56.0">
4 <install version="1.0"> 4 <repository changeset_revision="7206dbf34dcd" name="package_picard_1_56_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 <actions>
6 <action type="shell_command">mkdir picard</action>
7 <action type="shell_command">wget --quiet -O picard-tools-1.56.zip http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-tools-1.56.zip</action>
8 <action type="shell_command">unzip picard-tools-1.56.zip</action>
9 <action type="move_directory_files">
10 <source_directory>picard-tools-1.56</source_directory>
11 <destination_directory>$INSTALL_DIR/jars</destination_directory>
12 </action>
13 <action type="set_environment">
14 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable>
15 </action>
16 </actions>
17 </install>
18 <readme>
19 </readme>
20 </package> 5 </package>
21 </tool_dependency> 6 </tool_dependency>