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comparison picard_FastqToSam.xml @ 15:a5a13ea16d17 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
author iuc
date Tue, 19 Jun 2018 11:28:30 -0400
parents 486d7500da69
children 4740a2548206
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14:486d7500da69 15:a5a13ea16d17
1 <tool name="FastqToSam" id="picard_FastqToSam" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> 1 <tool name="FastqToSam" id="picard_FastqToSam" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
2 <description>convert Fastq data into unaligned BAM</description> 2 <description>convert Fastq data into unaligned BAM</description>
3 <macros> 3 <macros>
4 <import>picard_macros.xml</import> 4 <import>picard_macros.xml</import>
5 <token name="@WRAPPER_VERSION@">0</token> 5 <token name="@WRAPPER_VERSION@">1</token>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 @java_options@ 9 @java_options@
10 picard 10 picard
64 64
65 SORT_ORDER=coordinate 65 SORT_ORDER=coordinate
66 VALIDATION_STRINGENCY="${validation_stringency}" 66 VALIDATION_STRINGENCY="${validation_stringency}"
67 QUIET=true 67 QUIET=true
68 VERBOSITY=ERROR 68 VERBOSITY=ERROR
69 69 @TMPDIR_OPTION@
70 ]]></command> 70 ]]></command>
71 <inputs> 71 <inputs>
72 <conditional name="input_type"> 72 <conditional name="input_type">
73 <param name="input_type_selector" type="select" label="What is your input data" help="Select between single end, paired end, and collections. See help below for full explanation of dataset types"> 73 <param name="input_type_selector" type="select" label="What is your input data" help="Select between single end, paired end, and collections. See help below for full explanation of dataset types">
74 <option value="se">Single end (single dataset)</option> 74 <option value="se">Single end (single dataset)</option>