Mercurial > repos > devteam > picard
comparison test-data/picard_ValidateSamFile_test1.txt @ 3:52fdfc45590a draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
| author | devteam |
|---|---|
| date | Thu, 16 Jul 2015 15:32:31 -0400 |
| parents | |
| children |
comparison
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| 2:93ace7e49295 | 3:52fdfc45590a |
|---|---|
| 1 ERROR: Read groups is empty | |
| 2 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:15130:6486, A record is missing a read group | |
| 3 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:19193:4910, A record is missing a read group | |
| 4 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:19687:27581, A record is missing a read group | |
| 5 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:25123:14783, A record is missing a read group | |
| 6 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:16897:10864, A record is missing a read group | |
| 7 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:18180:25039, A record is missing a read group | |
| 8 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:18745:16268, A record is missing a read group | |
| 9 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:28904:12081, A record is missing a read group | |
| 10 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13486:23487, A record is missing a read group | |
| 11 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13545:26345, A record is missing a read group | |
| 12 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:19673:17954, A record is missing a read group | |
| 13 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:3642:12806, A record is missing a read group | |
| 14 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:21319:16719, A record is missing a read group | |
| 15 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:26456:9833, A record is missing a read group | |
| 16 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:14672:12340, A record is missing a read group | |
| 17 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:24128:14251, A record is missing a read group | |
| 18 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:24520:20516, A record is missing a read group | |
| 19 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:7598:17197, A record is missing a read group | |
| 20 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:15870:27794, A record is missing a read group | |
| 21 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:18833:21202, A record is missing a read group | |
| 22 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:15130:6486, A record is missing a read group | |
| 23 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:19193:4910, A record is missing a read group | |
| 24 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:19687:27581, A record is missing a read group | |
| 25 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:22554:16461, A record is missing a read group | |
| 26 ERROR: Record 24, Read name M01368:28:000000000-A5KYY:1:1101:22554:16461, Mate negative strand flag does not match read negative strand flag of mate | |
| 27 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:22554:16461, A record is missing a read group | |
| 28 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:25123:14783, A record is missing a read group | |
| 29 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:7459:20893, A record is missing a read group | |
| 30 ERROR: Record 28, Read name M01368:28:000000000-A5KYY:1:1101:7459:20893, Mate negative strand flag does not match read negative strand flag of mate | |
| 31 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:7459:20893, A record is missing a read group | |
| 32 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:16897:10864, A record is missing a read group | |
| 33 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:18180:25039, A record is missing a read group | |
| 34 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:18745:16268, A record is missing a read group | |
| 35 WARNING: Read name M01368:28:000000000-A5KYY:1:1102:28904:12081, A record is missing a read group | |
| 36 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13120:19662, A record is missing a read group | |
| 37 ERROR: Record 33, Read name M01368:28:000000000-A5KYY:1:1103:13120:19662, Mate negative strand flag does not match read negative strand flag of mate | |
| 38 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13120:19662, A record is missing a read group | |
| 39 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13486:23487, A record is missing a read group | |
| 40 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:13545:26345, A record is missing a read group | |
| 41 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:14399:18263, A record is missing a read group | |
| 42 ERROR: Record 37, Read name M01368:28:000000000-A5KYY:1:1103:14399:18263, Mate negative strand flag does not match read negative strand flag of mate | |
| 43 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:14399:18263, A record is missing a read group | |
| 44 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:19673:17954, A record is missing a read group | |
| 45 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:24192:10454, A record is missing a read group | |
| 46 ERROR: Record 41, Read name M01368:28:000000000-A5KYY:1:1103:24192:10454, Mate negative strand flag does not match read negative strand flag of mate | |
| 47 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:24192:10454, A record is missing a read group | |
| 48 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:3642:12806, A record is missing a read group | |
| 49 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:6510:18393, A record is missing a read group | |
| 50 ERROR: Record 43, Read name M01368:28:000000000-A5KYY:1:1103:6510:18393, Mate negative strand flag does not match read negative strand flag of mate | |
| 51 WARNING: Read name M01368:28:000000000-A5KYY:1:1103:6510:18393, A record is missing a read group | |
| 52 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:13741:15680, A record is missing a read group | |
| 53 ERROR: Record 45, Read name M01368:28:000000000-A5KYY:1:1104:13741:15680, Mate negative strand flag does not match read negative strand flag of mate | |
| 54 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:13741:15680, A record is missing a read group | |
| 55 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:21319:16719, A record is missing a read group | |
| 56 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:24281:16164, A record is missing a read group | |
| 57 ERROR: Record 48, Read name M01368:28:000000000-A5KYY:1:1104:24281:16164, Mate negative strand flag does not match read negative strand flag of mate | |
| 58 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:24281:16164, A record is missing a read group | |
| 59 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:26456:9833, A record is missing a read group | |
| 60 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:9455:13351, A record is missing a read group | |
| 61 ERROR: Record 51, Read name M01368:28:000000000-A5KYY:1:1104:9455:13351, Mate negative strand flag does not match read negative strand flag of mate | |
| 62 WARNING: Read name M01368:28:000000000-A5KYY:1:1104:9455:13351, A record is missing a read group | |
| 63 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:14672:12340, A record is missing a read group | |
| 64 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:21471:18067, A record is missing a read group | |
| 65 ERROR: Record 54, Read name M01368:28:000000000-A5KYY:1:1105:21471:18067, Mate negative strand flag does not match read negative strand flag of mate | |
| 66 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:21471:18067, A record is missing a read group | |
| 67 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:24128:14251, A record is missing a read group | |
| 68 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:24520:20516, A record is missing a read group | |
| 69 WARNING: Read name M01368:28:000000000-A5KYY:1:1105:7598:17197, A record is missing a read group | |
| 70 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:15870:27794, A record is missing a read group | |
| 71 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:18833:21202, A record is missing a read group | |
| 72 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:19331:13430, A record is missing a read group | |
| 73 ERROR: Record 61, Read name M01368:28:000000000-A5KYY:1:1106:19331:13430, Mate negative strand flag does not match read negative strand flag of mate | |
| 74 WARNING: Read name M01368:28:000000000-A5KYY:1:1106:19331:13430, A record is missing a read group | |
| 75 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10045:12104, A record is missing a read group | |
| 76 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10045:12104, A record is missing a read group | |
| 77 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10126:23848, A record is missing a read group | |
| 78 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10126:23848, A record is missing a read group | |
| 79 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10229:22034, A record is missing a read group | |
| 80 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10229:22034, A record is missing a read group | |
| 81 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10278:20774, A record is missing a read group | |
| 82 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10278:20774, A record is missing a read group | |
| 83 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10291:14859, A record is missing a read group | |
| 84 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10291:14859, A record is missing a read group | |
| 85 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10479:22035, A record is missing a read group | |
| 86 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10479:22035, A record is missing a read group | |
| 87 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10581:22138, A record is missing a read group | |
| 88 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10581:22138, A record is missing a read group | |
| 89 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10696:7547, A record is missing a read group | |
| 90 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10696:7547, A record is missing a read group | |
| 91 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10891:2447, A record is missing a read group | |
| 92 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:10891:2447, A record is missing a read group | |
| 93 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11083:9831, A record is missing a read group | |
| 94 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11083:9831, A record is missing a read group | |
| 95 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11136:11974, A record is missing a read group | |
| 96 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11136:11974, A record is missing a read group | |
| 97 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11197:4908, A record is missing a read group | |
| 98 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11197:4908, A record is missing a read group | |
| 99 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11224:22137, A record is missing a read group | |
| 100 WARNING: Read name M01368:28:000000000-A5KYY:1:1101:11224:22137, A record is missing a read group | |
| 101 Maximum output of [100] errors reached. |