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comparison test-data/picard_CollectBaseDistributionByCycle_test1.tab @ 14:486d7500da69 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
author iuc
date Mon, 16 Apr 2018 21:27:09 -0400
parents 52fdfc45590a
children
comparison
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13:c7dd8d7946b8 14:486d7500da69
1 ## htsjdk.samtools.metrics.StringHeader 1 ## htsjdk.samtools.metrics.StringHeader
2 # picard.analysis.CollectBaseDistributionByCycle CHART_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_660.dat ALIGNED_READS_ONLY=true PF_READS_ONLY=true INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_659.dat REFERENCE_SEQUENCE=/Users/anton/temp/mt.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false 2 # CollectBaseDistributionByCycle CHART_OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_16.dat ALIGNED_READS_ONLY=true PF_READS_ONLY=true INPUT=picard_CollectBaseDistributionByCycle_bam OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_15.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
3 ## htsjdk.samtools.metrics.StringHeader 3 ## htsjdk.samtools.metrics.StringHeader
4 # Started on: Fri Oct 03 10:05:03 EDT 2014 4 # Started on: Sat Apr 14 09:27:50 CEST 2018
5 5
6 ## METRICS CLASS picard.analysis.BaseDistributionByCycleMetrics 6 ## METRICS CLASS picard.analysis.BaseDistributionByCycleMetrics
7 READ_END CYCLE PCT_A PCT_C PCT_G PCT_T PCT_N 7 READ_END CYCLE PCT_A PCT_C PCT_G PCT_T PCT_N
8 1 1 21 22 29 28 0 8 1 1 21 22 29 28 0
9 1 2 49 13 12 26 0 9 1 2 49 13 12 26 0