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comparison picard_CollectAlignmentSummaryMetrics.xml @ 9:41b8d087a2d2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author devteam
date Wed, 07 Dec 2016 14:56:16 -0500
parents e417b1d6288d
children 486d7500da69
comparison
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8:e417b1d6288d 9:41b8d087a2d2
17 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) 17 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path )
18 #end if 18 #end if
19 19
20 picard 20 picard
21 CollectAlignmentSummaryMetrics 21 CollectAlignmentSummaryMetrics
22 INPUT='$inputFile.element_identifier' 22 INPUT='$escaped_element_identifier'
23 OUTPUT="${outFile}" 23 OUTPUT="${outFile}"
24 MAX_INSERT_SIZE=${maxinsert} 24 MAX_INSERT_SIZE=${maxinsert}
25 #for $sequence in $adapters: 25 #for $sequence in $adapters:
26 ADAPTER_SEQUENCE="${sequence.adapter}" 26 ADAPTER_SEQUENCE="${sequence.adapter}"
27 #end for 27 #end for