Mercurial > repos > devteam > package_vcftools_0_1_11

comparison tool_dependencies.xml @ 5:5fc60c9d748f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_vcftools_0_1_11 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 18:48:06 -0500
parents 4081df719fff
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4:4081df719fff 5:5fc60c9d748f
9 <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. --> 9 <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. -->
10 <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action> 10 <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action>
11 <action type="set_environment"> 11 <action type="set_environment">
12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable> 12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable>
13 </action> 13 </action>
14 <action type="set_environment">
15 <environment_variable name="PERL5LIB" action="prepend_to">$INSTALL_DIR/vcftools/lib/perl5/site_perl</environment_variable>
16 </action>
14 </actions> 17 </actions>
15 </install> 18 </install>
16 <readme> 19 <readme>
17 A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project 20 A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project
18 </readme> 21 </readme>