Mercurial > repos > devteam > package_samtools_0_1_18

comparison tool_dependencies.xml @ 2:c0f72bdba484 draft default tip

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Uploaded updated tool dependency definition that copies header files to INSTALL_DIR/include/bam/
author devteam
date Mon, 30 Sep 2013 14:20:29 -0400
parents ecf4ca7388a5
children
comparison
equal deleted inserted replaced
1:ecf4ca7388a5 2:c0f72bdba484
2 <tool_dependency> 2 <tool_dependency>
3 <package name="samtools" version="0.1.18"> 3 <package name="samtools" version="0.1.18">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions_group> 5 <actions_group>
6 <actions os="linux" architecture="i386"> 6 <actions os="linux" architecture="i386">
7 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/samtools/samtools-0.1.18-linux-i386.tgz</action> 7 <action type="download_by_url" target_filename="samtools-0.1.18.tgz">http://depot.galaxyproject.org/package/linux/i386/samtools/samtools-0.1.18-linux-i386.tgz</action>
8 <action type="move_directory_files"> 8 <action type="move_directory_files">
9 <source_directory>.</source_directory> 9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory> 10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action> 11 </action>
12 </actions> 12 </actions>
13 <actions os="linux" architecture="x86_64"> 13 <actions os="linux" architecture="x86_64">
14 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/samtools/samtools-0.1.18-linux-x86_64.tgz</action> 14 <action type="download_by_url" target_filename="samtools-0.1.18.tgz">http://depot.galaxyproject.org/package/linux/x86_64/samtools/samtools-0.1.18-linux-x86_64.tgz</action>
15 <action type="move_directory_files"> 15 <action type="move_directory_files">
16 <source_directory>.</source_directory> 16 <source_directory>.</source_directory>
17 <destination_directory>$INSTALL_DIR</destination_directory> 17 <destination_directory>$INSTALL_DIR</destination_directory>
18 </action> 18 </action>
19 </actions> 19 </actions>
20 <actions os="darwin" architecture="i386"> 20 <actions os="darwin" architecture="i386">
21 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/i386/samtools/samtools-0.1.18-Darwin-i386.tgz</action> 21 <action type="download_by_url" target_filename="samtools-0.1.18.tgz">http://depot.galaxyproject.org/package/darwin/i386/samtools/samtools-0.1.18-Darwin-i386.tgz</action>
22 <action type="move_directory_files"> 22 <action type="move_directory_files">
23 <source_directory>.</source_directory> 23 <source_directory>.</source_directory>
24 <destination_directory>$INSTALL_DIR</destination_directory> 24 <destination_directory>$INSTALL_DIR</destination_directory>
25 </action> 25 </action>
26 </actions> 26 </actions>
27 <actions os="darwin" architecture="x86_64"> 27 <actions os="darwin" architecture="x86_64">
28 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/samtools/samtools-0.1.18-Darwin-x86_64.tgz</action> 28 <action type="download_by_url" target_filename="samtools-0.1.18.tgz">http://depot.galaxyproject.org/package/darwin/x86_64/samtools/samtools-0.1.18-Darwin-x86_64.tgz</action>
29 <action type="move_directory_files"> 29 <action type="move_directory_files">
30 <source_directory>.</source_directory> 30 <source_directory>.</source_directory>
31 <destination_directory>$INSTALL_DIR</destination_directory> 31 <destination_directory>$INSTALL_DIR</destination_directory>
32 </action> 32 </action>
33 </actions> 33 </actions>
41 </action> 41 </action>
42 <action type="move_file"> 42 <action type="move_file">
43 <source>libbam.a</source> 43 <source>libbam.a</source>
44 <destination>$INSTALL_DIR/lib</destination> 44 <destination>$INSTALL_DIR/lib</destination>
45 </action> 45 </action>
46 <action type="move_directory_files">
47 <source_directory>src</source_directory>
48 <destination_directory>$INSTALL_DIR/include/bam</destination_directory>
49 </action>
46 </actions> 50 </actions>
47 <action type="set_environment"> 51 <action type="set_environment">
48 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 52 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
49 <environment_variable name="BAM_LIB_PATH" action="set_to">$INSTALL_DIR/lib</environment_variable> 53 <environment_variable name="BAM_LIB_PATH" action="set_to">$INSTALL_DIR/lib</environment_variable>
54 <environment_variable name="BAM_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
50 </action> 55 </action>
51 </actions_group> 56 </actions_group>
52 </install> 57 </install>
53 <readme> 58 <readme>
54 Program: samtools (Tools for alignments in the SAM format) 59 Program: samtools (Tools for alignments in the SAM format)