Mercurial > repos > devteam > package_rpy_1_0_3

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 18:46:37 -0500
parents c0eb80864491
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3e11ba53f2a6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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3 <package name="numpy" version="1.9">
3e11ba53f2a6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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4 <repository changeset_revision="f9289486f06d" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
3e11ba53f2a6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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5 </package>
3e11ba53f2a6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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6 <package name="R" version="2.11.0">
3e11ba53f2a6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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7 <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="rpy" version="1.0.3">
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3e11ba53f2a6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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10 <install version="1.0">
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11 <actions>
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12 <!--
3e11ba53f2a6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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13 Need to download from depot.galaxyproject.org, because the distributed version of rpy 1.0.3
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14 doesn't recognize R 2.11.0 as a valid version.
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15 -->
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16 <action type="download_by_url">http://depot.galaxyproject.org/package/source/rpy-1.0.3.tar.gz</action>
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17 <action type="set_environment_for_install">
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18 <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
3e11ba53f2a6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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19 <package name="R" version="2.11.0" />
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20 </repository>
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21 </action>
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22 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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23 <action type="shell_command">
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24 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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25 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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26 </action>
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27 <action type="set_environment">
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28 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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30 <environment_variable action="set_to" name="PYTHONPATH_RPY">$INSTALL_DIR/lib/python</environment_variable>
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31 <environment_variable action="set_to" name="PATH_RPY">$INSTALL_DIR/bin</environment_variable>
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32 </action>
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33 </actions>
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34 </install>
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35 <readme />
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36 </package>
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37 </tool_dependency>