Mercurial > repos > devteam > package_emboss_5_0_0

comparison tool_dependencies.xml @ 9:423c17dafd88 draft default tip

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Uploaded updated tool dependency definition.
author devteam
date Wed, 11 Dec 2013 16:22:59 -0500
parents 27daa4034544
children
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8:27daa4034544 9:423c17dafd88
26 </actions> 26 </actions>
27 <actions> 27 <actions>
28 <package name="libx11" version="1.5.0"> 28 <package name="libx11" version="1.5.0">
29 <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 29 <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
30 </package> 30 </package>
31 <package name="libgd" version="2.1.0">
32 <repository changeset_revision="979b30851e9a" name="package_libgd_2_1_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
33 </package>
31 <package name="libxproto" version="7.0.23"> 34 <package name="libxproto" version="7.0.23">
32 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 35 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
33 </package> 36 </package>
34 <package name="libxcb" version="1.9.1"> 37 <package name="libxcb" version="1.9.1">
35 <repository changeset_revision="30193f711b44" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 38 <repository changeset_revision="30193f711b44" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
36 </package> 39 </package>
37 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action> 40 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
38 <action type="set_environment_for_install"> 41 <action type="set_environment_for_install">
42 <repository changeset_revision="979b30851e9a" name="package_libgd_2_1_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
43 <package name="libgd" version="2.1.0" />
44 </repository>
39 <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> 45 <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
40 <package name="libx11" version="1.5.0" /> 46 <package name="libx11" version="1.5.0" />
41 </repository> 47 </repository>
42 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> 48 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
43 <package name="libxproto" version="7.0.23" /> 49 <package name="libxproto" version="7.0.23" />
46 <package name="libxcb" version="1.9.1" /> 52 <package name="libxcb" version="1.9.1" />
47 </repository> 53 </repository>
48 </action> 54 </action>
49 <action type="shell_command"> 55 <action type="shell_command">
50 export LDFLAGS="-L$XCB_LIBS -lm" 56 export LDFLAGS="-L$XCB_LIBS -lm"
51 export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR 57 export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; \
58 ./configure --prefix=$INSTALL_DIR \
59 --x-includes=$X11_INCLUDE_DIR \
60 --x-libraries=$X11_LIB_DIR \
61 --with-pngdriver=$GD_ROOT
52 </action> 62 </action>
53 <action type="shell_command">make &amp;&amp; make install</action> 63 <action type="shell_command">make &amp;&amp; make install</action>
54 <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action> 64 <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
55 <action type="change_directory">PHYLIP-3.6b</action> 65 <action type="change_directory">PHYLIP-3.6b</action>
56 <action type="shell_command"> 66 <action type="shell_command">
57 export LDFLAGS="-L$XCB_LIBS -lm" 67 export LDFLAGS="-L$XCB_LIBS -lm"
58 export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR 68 export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; \
69 ./configure --prefix=$INSTALL_DIR \
70 --x-includes=$X11_INCLUDE_DIR \
71 --x-libraries=$X11_LIB_DIR \
72 --with-pngdriver=$GD_ROOT
59 </action> 73 </action>
60 <action type="shell_command">make &amp;&amp; make install</action> 74 <action type="shell_command">make &amp;&amp; make install</action>
61 </actions> 75 </actions>
62 <action type="set_environment"> 76 <action type="set_environment">
63 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 77 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>