Mercurial > repos > devteam > package_emboss_5_0_0

comparison tool_dependencies.xml @ 0:9fd501d0f295 draft

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Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
author devteam
date Thu, 20 Jun 2013 15:18:09 -0400
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children f117a9d9dc9c
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-1:000000000000 0:9fd501d0f295
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="libx11" version="1.5.0">
4 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="emboss" version="5.0.0">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
10 <action type="set_environment_for_install">
11 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
12 <package name="libx11" version="1.5.0" />
13 </repository>
14 </action>
15 <action type="shell_command">
16 if [ -z $X11_LIB_DIR ] || [ -z $X11_INCLUDE_DIR ]; then
17 ./configure --prefix=$INSTALL_DIR
18 else
19 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
20 fi
21 </action>
22 <action type="shell_command">make</action>
23 <action type="shell_command">make install</action>
24 </actions>
25 <actions>
26 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
27 <action type="set_environment_for_install">
28 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
29 <package name="libx11" version="1.5.0" />
30 </repository>
31 </action>
32 <action type="shell_command">
33 if [ -z $X11_LIB_DIR ] || [ -z $X11_INCLUDE_DIR ]; then
34 ./configure --prefix=$INSTALL_DIR
35 else
36 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR CFLAGS='-I$INSTALL_DIR/include'
37 fi
38 </action>
39 <action type="shell_command">make</action>
40 <action type="shell_command">make install</action>
41 </actions>
42 </install>
43 <readme>
44 These links provide information for building the Emboss package in most environments.
45
46 System requirements
47 http://emboss.sourceforge.net/download/#Requirements
48
49 Platform-dependent notes
50 http://emboss.sourceforge.net/download/#Platforms
51 </readme>
52 </package>
53 </tool_dependency>