Mercurial > repos > devteam > package_emboss_5_0_0

comparison tool_dependencies.xml @ 5:69d798291360 draft

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Updated tool dependency definition.
author devteam
date Wed, 27 Nov 2013 23:52:17 -0500
parents be713681f50f
children 64b58c8f2827
comparison
equal deleted inserted replaced
4:be713681f50f 5:69d798291360
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="libx11" version="1.5.0"> 3 <package name="libx11" version="1.5.0">
4 <repository changeset_revision="c15cbda00ea6" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="06f3f6f667b0" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="libxproto" version="7.0.23">
7 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="libxcb" version="1.9.1">
10 <repository changeset_revision="e088e0d75718" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package> 11 </package>
6 <package name="emboss" version="5.0.0"> 12 <package name="emboss" version="5.0.0">
7 <install version="1.0"> 13 <install version="1.0">
8 <actions> 14 <actions>
9 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action> 15 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
10 <action type="set_environment_for_install"> 16 <action type="set_environment_for_install">
11 <repository changeset_revision="c15cbda00ea6" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="06f3f6f667b0" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
12 <package name="libx11" version="1.5.0" /> 18 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
13 </repository> 19 <repository changeset_revision="e088e0d75718" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
14 </action> 20 </action>
15 <action language="cheetah" type="template_command"> 21 <action type="shell_command">
16 #if env.get('X11_LIB_DIR', False) and env.get('X11_INCLUDE_DIR', False): 22 export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; \
17 ./configure --prefix=$env.INSTALL_DIR --x-includes=$env.X11_INCLUDE_DIR --x-libraries=$env.X11_LIB_DIR 23 export LDFLAGS="-L$XCB_LIBS" &amp;&amp; \
18 #else: 24 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
19 ./configure --prefix=$env.INSTALL_DIR
20 #end if
21 </action> 25 </action>
22 <action type="shell_command">make &amp;&amp; make install</action> 26 <action type="shell_command">make &amp;&amp; make install</action>
23 <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action> 27 <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
24 <action type="change_directory">PHYLIP-3.6b</action> 28 <action type="change_directory">PHYLIP-3.6b</action>
25 <action language="cheetah" type="template_command"> 29 <action type="shell_command">
26 #if env.get('X11_LIB_DIR', False) and env.get('X11_INCLUDE_DIR', False): 30 export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; \
27 ./configure --prefix=$env.INSTALL_DIR --x-includes=$env.X11_INCLUDE_DIR --x-libraries=$env.X11_LIB_DIR CFLAGS='-I$env.INSTALL_DIR/include' 31 export LDFLAGS="-L$XCB_LIBS" &amp;&amp; \
28 #else: 32 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
29 ./configure --prefix=$env.INSTALL_DIR
30 #end if
31 </action> 33 </action>
32 <action type="shell_command">make &amp;&amp; make install</action> 34 <action type="shell_command">make &amp;&amp; make install</action>
33 <action type="set_environment"> 35 <action type="set_environment">
34 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 36 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
35 </action> 37 </action>
36 </actions> 38 </actions>
37 </install> 39 </install>
38 <readme> 40 <readme>
39 These links provide information for building the Emboss package in most environments. 41 These links provide information for building the Emboss package in most environments.