Mercurial > repos > devteam > package_emboss_5_0_0

comparison tool_dependencies.xml @ 2:3569b0e8a8c1 draft

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Uploaded tool dependency definition that explicitly prepends $INSTALL_DIR/bin to the $PATH environment variable.
author devteam
date Tue, 25 Jun 2013 15:36:12 -0400
parents f117a9d9dc9c
children 0e97d4936c23
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1:f117a9d9dc9c 2:3569b0e8a8c1
11 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> 11 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
12 <package name="libx11" version="1.5.0" /> 12 <package name="libx11" version="1.5.0" />
13 </repository> 13 </repository>
14 </action> 14 </action>
15 <action type="shell_command"> 15 <action type="shell_command">
16 if [ -z $X11_LIB_DIR ] || [ -z $X11_INCLUDE_DIR ]; then 16 if [ -z $X11_LIB_DIR ] [ -z $X11_INCLUDE_DIR ]; then
17 ./configure --prefix=$INSTALL_DIR 17 ./configure --prefix=$INSTALL_DIR
18 else 18 else
19 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR 19 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
20 fi 20 fi
21 </action> 21 </action>
22 <action type="shell_command">make &amp;&amp; make install</action> 22 <action type="shell_command">make &amp;&amp; make install</action>
23 <action type="download_file" extract="true">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action> 23 <action type="download_file" extract="true">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
24 <action type="change_directory">PHYLIP-3.6b</action> 24 <action type="change_directory">PHYLIP-3.6b</action>
25 <action type="shell_command"> 25 <action type="shell_command">
26 if [ -z $X11_LIB_DIR ] || [ -z $X11_INCLUDE_DIR ]; then 26 if [ -z $X11_LIB_DIR ] [ -z $X11_INCLUDE_DIR ]; then
27 ./configure --prefix=$INSTALL_DIR 27 ./configure --prefix=$INSTALL_DIR
28 else 28 else
29 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR CFLAGS='-I../include' 29 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR CFLAGS='-I../include'
30 fi 30 fi
31 </action> 31 </action>
32 <action type="shell_command">make &amp;&amp; make install</action> 32 <action type="shell_command">make &amp;&amp; make install</action>
33 <action type="set_environment">
34 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
35 </action>
33 </actions> 36 </actions>
34 </install> 37 </install>
35 <readme> 38 <readme>
36 These links provide information for building the Emboss package in most environments. 39 These links provide information for building the Emboss package in most environments.
37 40