# HG changeset patch
# User devteam
# Date 1452110440 18000
# Node ID f1cf1dd608676d3497205e4260e73d2b54af45ea
# Parent  8f011e7388e1a42036145addc6ff5666a6033c99
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/legacy/package_cairo_1_12_14 commit 00214cfe7548eb1e6ac3192f14ef9c270bef7fb3

diff -r 8f011e7388e1 -r f1cf1dd60867 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Apr 01 13:16:49 2014 -0400
+++ b/tool_dependencies.xml	Wed Jan 06 15:00:40 2016 -0500
@@ -1,45 +1,54 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="pixman" version="0.32.4">
-      <repository changeset_revision="bcf53d429118" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    <package name="pixman" version="0.32.4">
+        <repository changeset_revision="7056a708062b" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="libpng" version="1.6.7">
-      <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="freetype" version="2.5.2">
-      <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="fontconfig" version="2.11.1">
+        <repository changeset_revision="4b8a90926882" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="cairo" version="1.12.14">
-      <install version="1.0">
-          <actions>
-              <action type="download_by_url">http://depot.galaxyproject.org/package/source/cairo/cairo-1.12.14.tar.bz2</action>
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://depot.galaxyproject.org/package/source/cairo/cairo-1.12.14.tar.bz2</action>
                 <action type="set_environment_for_install">
-                  <repository changeset_revision="bcf53d429118" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                      <package name="pixman" version="0.32.4" />
+                    <repository changeset_revision="7056a708062b" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="pixman" version="0.32.4" />
+                    </repository>
+                    <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="libpng" version="1.6.7" />
                     </repository>
-                    <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                      <package name="libpng" version="1.6.7" />
+                    <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="freetype" version="2.5.2" />
                     </repository>
-                    <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                      <package name="freetype" version="2.5.2" />
+                    <repository changeset_revision="4b8a90926882" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="fontconfig" version="2.11.1" />
                     </repository>
                 </action>
+                <!-- edit configure and build/configure.ac.warnings to allow compiling cairo on gcc-4.9. Fixed in more recent versions of cairo -->
                 <action type="shell_command">
-                    export LDFLAGS="-Wl,-rpath,$PIXMAN_LIB_PATH -Wl,-rpath,$LIBPNG_ROOT/lib -Wl,-rpath,$FREETYPE_LIB_PATH" &amp;&amp; \ 
-                    ./configure --prefix=$INSTALL_DIR \
-                        --with-x=no \
-                        --enable-xcb-shm=no \
-                        --enable-xlib-xcb=no \
-                        --enable-xcb=no \
-                        --enable-xlib-xrender=no
+                    sed -i.bak 's|MAYBE_WARN="$MAYBE_WARN -flto"|MAYBE_WARN="$MAYBE_WARN -flto -ffat-lto-objects -fuse-linker-plugin" |' configure build/configure.ac.warnings
                 </action>
-                <action type="make_install" />
+                <action type="autoconf">--enable-quartz=no --enable-quartz-font=no --with-x=no --enable-xcb-shm=no --enable-xlib-xcb=no --enable-xcb=no --enable-gtk-doc=no --enable-gtk-doc-html=no --enable-xlib-xrender=no</action>
                 <!-- Create an empty cairo-xlib.h file, because R's configure script explicitly includes it even if X is disabled. -->
                 <action type="shell_command">touch $INSTALL_DIR/include/cairo/cairo-xlib.h</action>
                 <action type="set_environment">
-                  <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="prepend_to" name="CAIRO_LIB_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="CAIRO_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
+                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
+                    <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
+                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include/cairo</environment_variable>
+                    <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/include/cairo</environment_variable>
                     <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
+                    <environment_variable action="set_to" name="CAIRO_CFLAGS">-I$INSTALL_DIR/include/cairo</environment_variable>
+                    <environment_variable action="set_to" name="CAIRO_LIBS">"-L$INSTALL_DIR/lib -lcairo"</environment_variable>
                 </action>
             </actions>
         </install>