Mercurial > repos > devteam > package_bwa_0_5_9

comparison tool_dependencies.xml @ 1:1e8ba0ebe119 draft

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Uploaded updated tool dependency definition with precompiled binaries.
author devteam
date Tue, 17 Dec 2013 09:10:31 -0500
parents f59e468f1964
children 90168f400592
comparison
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0:f59e468f1964 1:1e8ba0ebe119
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="bwa" version="0.5.9"> 3 <package name="bwa" version="0.5.9">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions_group>
6 <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action> 6 <actions architecture="i386" os="linux">
7 <action type="shell_command">make</action> 7 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/bwa/bwa-0.5.9-Linux-i686.tgz</action>
8 <action type="move_file"> 8 <action type="move_directory_files">
9 <source>bwa</source> 9 <source_directory>.</source_directory>
10 <destination>$INSTALL_DIR/bin</destination> 10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
11 </action> 11 </action>
12 </actions>
13 <actions architecture="x86_64" os="linux">
14 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/bwa/bwa-0.5.9-Linux-x86_64.tgz</action>
15 <action type="move_directory_files">
16 <source_directory>.</source_directory>
17 <destination_directory>$INSTALL_DIR/bin</destination_directory>
18 </action>
19 </actions>
20 <actions architecture="x86_64" os="darwin">
21 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/bwa/bwa-0.5.9-Linux-x86_64.tgz</action>
22 <action type="move_directory_files">
23 <source_directory>.</source_directory>
24 <destination_directory>$INSTALL_DIR/bin</destination_directory>
25 </action>
26 </actions>
27 <actions>
28 <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action>
29 <action type="shell_command">make</action>
30 <action type="move_file">
31 <source>bwa</source>
32 <destination>$INSTALL_DIR/bin</destination>
33 </action>
34 </actions>
12 <action type="set_environment"> 35 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 36 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
14 </action> 37 </action>
15 </actions> 38 </actions_group>
16 </install> 39 </install>
17 <readme> 40 <readme>
18 This is the last version of BWA that uses separate files for BWT and reverse BWT. 41 This is the last version of BWA that uses separate files for BWT and reverse BWT.
19 42
20 Program: bwa (alignment via Burrows-Wheeler transformation) 43 Program: bwa (alignment via Burrows-Wheeler transformation)