Mercurial > repos > devteam > package_blast_plus_2_2_26

comparison tool_dependencies.xml @ 0:6fa5f871bf0b draft default tip

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Imported from capsule None
author devteam
date Mon, 19 May 2014 10:59:21 -0400
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-1:000000000000 0:6fa5f871bf0b
1 <?xml version='1.0' encoding='utf-8'?>
2 <tool_dependency>
3 <package name="blast+" version="2.2.26+">
4 <install version="1.0">
5 <actions_group>
6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
7 <actions os="darwin" architecture="x86_64">
8 <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-universal-macosx.tar.gz</action>
9 <action type="move_directory_files">
10 <source_directory>bin</source_directory>
11 <destination_directory>$INSTALL_DIR</destination_directory>
12 </action>
13 </actions>
14 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
15 <actions os="darwin" architecture="i386">
16 <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-universal-macosx.tar.gz</action>
17 <action type="move_directory_files">
18 <source_directory>bin</source_directory>
19 <destination_directory>$INSTALL_DIR</destination_directory>
20 </action>
21 </actions>
22 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
23 <actions os="linux" architecture="x86_64">
24 <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-x64-linux.tar.gz</action>
25 <action type="move_directory_files">
26 <source_directory>bin</source_directory>
27 <destination_directory>$INSTALL_DIR</destination_directory>
28 </action>
29 </actions>
30 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). -->
31 <actions os="linux" architecture="i386">
32 <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-ia32-linux.tar.gz</action>
33 <action type="move_directory_files">
34 <source_directory>bin</source_directory>
35 <destination_directory>$INSTALL_DIR</destination_directory>
36 </action>
37 </actions>
38 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). -->
39 <actions os="linux" architecture="i686">
40 <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-ia32-linux.tar.gz</action>
41 <action type="move_directory_files">
42 <source_directory>bin</source_directory>
43 <destination_directory>$INSTALL_DIR</destination_directory>
44 </action>
45 </actions>
46 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
47 <actions>
48 <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action>
49 <action type="shell_command">cd c++ &amp;&amp; ./configure --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
50 </actions>
51 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
52 <action type="set_environment">
53 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
54 </action>
55 </actions_group>
56 </install>
57 <readme>
58 These links provide information for building the NCBI Blast+ package in most environments.
59
60 System requirements
61 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
62 </readme>
63 </package>
64 </tool_dependency>