Mercurial > repos > devteam > package_bioc_hilbertvis_1_18_0

diff tool_dependencies.xml @ 2:d006f9a9db85 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_bioc_hilbertvis_1_18_0 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 18:33:31 -0500
parents 1c5702e90df0
children
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--- a/tool_dependencies.xml	Thu Mar 06 16:31:41 2014 -0500
+++ b/tool_dependencies.xml	Fri Dec 18 18:33:31 2015 -0500
@@ -1,20 +1,20 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="R" version="2.11.0">
-        <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="bioc_hilbertvis" version="1.18.0">
         <install version="1.0">
             <actions>
                 <action type="download_file">http://bioconductor.org/packages/2.12/bioc/src/contrib/HilbertVis_1.18.0.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="R" version="2.11.0" />
                     </repository>
                 </action>
-                <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL HilbertVis_1.18.0.tar.gz</action>
+                <action type="shell_command">export R_LIBS_USER=$INSTALL_DIR &amp;&amp; R CMD INSTALL HilbertVis_1.18.0.tar.gz</action>
                 <action type="set_environment">
-                    <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
                 </action>
             </actions>
         </install>