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comparison test-data/blastx_rhodopsin_vs_four_human.xml @ 13:4dcc9429d6d2 draft

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v0.2.00, updated to depend on BLAST+ 2.5.0
author peterjc
date Mon, 05 Dec 2016 13:58:24 -0500
parents 0e86300e49c0
children 13aa389f4eeb
comparison
equal deleted inserted replaced
12:d8f2c1f560ec 13:4dcc9429d6d2
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3 <BlastOutput> 3 <BlastOutput>
4 <BlastOutput_program>blastx</BlastOutput_program> 4 <BlastOutput_program>blastx</BlastOutput_program>
5 <BlastOutput_version>BLASTX 2.2.31+</BlastOutput_version> 5 <BlastOutput_version>BLASTX 2.5.0+</BlastOutput_version>
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7 <BlastOutput_db></BlastOutput_db> 7 <BlastOutput_db></BlastOutput_db>
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> 9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def>
10 <BlastOutput_query-len>1047</BlastOutput_query-len> 10 <BlastOutput_query-len>1047</BlastOutput_query-len>
22 <Iteration_iter-num>1</Iteration_iter-num> 22 <Iteration_iter-num>1</Iteration_iter-num>
23 <Iteration_query-ID>Query_1</Iteration_query-ID> 23 <Iteration_query-ID>Query_1</Iteration_query-ID>
24 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> 24 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
25 <Iteration_query-len>1047</Iteration_query-len> 25 <Iteration_query-len>1047</Iteration_query-len>
26 <Iteration_hits> 26 <Iteration_hits>
27 </Iteration_hits> 27 <Hit>
28 <Iteration_stat> 28 <Hit_num>1</Hit_num>
29 <Statistics> 29 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
30 <Statistics_db-num>0</Statistics_db-num>
31 <Statistics_db-len>0</Statistics_db-len>
32 <Statistics_hsp-len>30</Statistics_hsp-len>
33 <Statistics_eff-space>119944</Statistics_eff-space>
34 <Statistics_kappa>0.041</Statistics_kappa>
35 <Statistics_lambda>0.267</Statistics_lambda>
36 <Statistics_entropy>0.14</Statistics_entropy>
37 </Statistics>
38 </Iteration_stat>
39 <Iteration_message>No hits found</Iteration_message>
40 </Iteration>
41 <Iteration>
42 <Iteration_iter-num>2</Iteration_iter-num>
43 <Iteration_query-ID>Query_1</Iteration_query-ID>
44 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
45 <Iteration_query-len>1047</Iteration_query-len>
46 <Iteration_hits>
47 </Iteration_hits>
48 <Iteration_stat>
49 <Statistics>
50 <Statistics_db-num>0</Statistics_db-num>
51 <Statistics_db-len>0</Statistics_db-len>
52 <Statistics_hsp-len>30</Statistics_hsp-len>
53 <Statistics_eff-space>119944</Statistics_eff-space>
54 <Statistics_kappa>0.041</Statistics_kappa>
55 <Statistics_lambda>0.267</Statistics_lambda>
56 <Statistics_entropy>0.14</Statistics_entropy>
57 </Statistics>
58 </Iteration_stat>
59 <Iteration_message>No hits found</Iteration_message>
60 </Iteration>
61 <Iteration>
62 <Iteration_iter-num>3</Iteration_iter-num>
63 <Iteration_query-ID>Query_1</Iteration_query-ID>
64 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
65 <Iteration_query-len>1047</Iteration_query-len>
66 <Iteration_hits>
67 </Iteration_hits>
68 <Iteration_stat>
69 <Statistics>
70 <Statistics_db-num>0</Statistics_db-num>
71 <Statistics_db-len>0</Statistics_db-len>
72 <Statistics_hsp-len>30</Statistics_hsp-len>
73 <Statistics_eff-space>119944</Statistics_eff-space>
74 <Statistics_kappa>0.041</Statistics_kappa>
75 <Statistics_lambda>0.267</Statistics_lambda>
76 <Statistics_entropy>0.14</Statistics_entropy>
77 </Statistics>
78 </Iteration_stat>
79 <Iteration_message>No hits found</Iteration_message>
80 </Iteration>
81 <Iteration>
82 <Iteration_iter-num>4</Iteration_iter-num>
83 <Iteration_query-ID>Query_1</Iteration_query-ID>
84 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
85 <Iteration_query-len>1047</Iteration_query-len>
86 <Iteration_hits>
87 <Hit>
88 <Hit_num>1</Hit_num>
89 <Hit_id>Subject_4</Hit_id>
90 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> 30 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
91 <Hit_accession>Subject_4</Hit_accession> 31 <Hit_accession>Subject_4</Hit_accession>
92 <Hit_len>348</Hit_len> 32 <Hit_len>348</Hit_len>
93 <Hit_hsps> 33 <Hit_hsps>
94 <Hsp> 34 <Hsp>
115 </Iteration_hits> 55 </Iteration_hits>
116 <Iteration_stat> 56 <Iteration_stat>
117 <Statistics> 57 <Statistics>
118 <Statistics_db-num>0</Statistics_db-num> 58 <Statistics_db-num>0</Statistics_db-num>
119 <Statistics_db-len>0</Statistics_db-len> 59 <Statistics_db-len>0</Statistics_db-len>
120 <Statistics_hsp-len>30</Statistics_hsp-len> 60 <Statistics_hsp-len>45</Statistics_hsp-len>
121 <Statistics_eff-space>119944</Statistics_eff-space> 61 <Statistics_eff-space>947568</Statistics_eff-space>
122 <Statistics_kappa>0.041</Statistics_kappa> 62 <Statistics_kappa>0.041</Statistics_kappa>
123 <Statistics_lambda>0.267</Statistics_lambda> 63 <Statistics_lambda>0.267</Statistics_lambda>
124 <Statistics_entropy>0.14</Statistics_entropy> 64 <Statistics_entropy>0.14</Statistics_entropy>
125 </Statistics> 65 </Statistics>
126 </Iteration_stat> 66 </Iteration_stat>
127 </Iteration> 67 </Iteration>
128 <Iteration> 68 <Iteration>
129 <Iteration_iter-num>5</Iteration_iter-num> 69 <Iteration_iter-num>2</Iteration_iter-num>
130 <Iteration_query-ID>Query_2</Iteration_query-ID> 70 <Iteration_query-ID>Query_2</Iteration_query-ID>
131 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> 71 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
132 <Iteration_query-len>1574</Iteration_query-len> 72 <Iteration_query-len>1574</Iteration_query-len>
133 <Iteration_hits> 73 <Iteration_hits>
134 </Iteration_hits> 74 <Hit>
135 <Iteration_stat> 75 <Hit_num>1</Hit_num>
136 <Statistics> 76 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
137 <Statistics_db-num>0</Statistics_db-num>
138 <Statistics_db-len>0</Statistics_db-len>
139 <Statistics_hsp-len>33</Statistics_hsp-len>
140 <Statistics_eff-space>183143</Statistics_eff-space>
141 <Statistics_kappa>0.041</Statistics_kappa>
142 <Statistics_lambda>0.267</Statistics_lambda>
143 <Statistics_entropy>0.14</Statistics_entropy>
144 </Statistics>
145 </Iteration_stat>
146 <Iteration_message>No hits found</Iteration_message>
147 </Iteration>
148 <Iteration>
149 <Iteration_iter-num>6</Iteration_iter-num>
150 <Iteration_query-ID>Query_2</Iteration_query-ID>
151 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
152 <Iteration_query-len>1574</Iteration_query-len>
153 <Iteration_hits>
154 </Iteration_hits>
155 <Iteration_stat>
156 <Statistics>
157 <Statistics_db-num>0</Statistics_db-num>
158 <Statistics_db-len>0</Statistics_db-len>
159 <Statistics_hsp-len>33</Statistics_hsp-len>
160 <Statistics_eff-space>183143</Statistics_eff-space>
161 <Statistics_kappa>0.041</Statistics_kappa>
162 <Statistics_lambda>0.267</Statistics_lambda>
163 <Statistics_entropy>0.14</Statistics_entropy>
164 </Statistics>
165 </Iteration_stat>
166 <Iteration_message>No hits found</Iteration_message>
167 </Iteration>
168 <Iteration>
169 <Iteration_iter-num>7</Iteration_iter-num>
170 <Iteration_query-ID>Query_2</Iteration_query-ID>
171 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
172 <Iteration_query-len>1574</Iteration_query-len>
173 <Iteration_hits>
174 </Iteration_hits>
175 <Iteration_stat>
176 <Statistics>
177 <Statistics_db-num>0</Statistics_db-num>
178 <Statistics_db-len>0</Statistics_db-len>
179 <Statistics_hsp-len>33</Statistics_hsp-len>
180 <Statistics_eff-space>183143</Statistics_eff-space>
181 <Statistics_kappa>0.041</Statistics_kappa>
182 <Statistics_lambda>0.267</Statistics_lambda>
183 <Statistics_entropy>0.14</Statistics_entropy>
184 </Statistics>
185 </Iteration_stat>
186 <Iteration_message>No hits found</Iteration_message>
187 </Iteration>
188 <Iteration>
189 <Iteration_iter-num>8</Iteration_iter-num>
190 <Iteration_query-ID>Query_2</Iteration_query-ID>
191 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
192 <Iteration_query-len>1574</Iteration_query-len>
193 <Iteration_hits>
194 <Hit>
195 <Hit_num>1</Hit_num>
196 <Hit_id>Subject_4</Hit_id>
197 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> 77 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
198 <Hit_accession>Subject_4</Hit_accession> 78 <Hit_accession>Subject_4</Hit_accession>
199 <Hit_len>348</Hit_len> 79 <Hit_len>348</Hit_len>
200 <Hit_hsps> 80 <Hit_hsps>
201 <Hsp> 81 <Hsp>
222 </Iteration_hits> 102 </Iteration_hits>
223 <Iteration_stat> 103 <Iteration_stat>
224 <Statistics> 104 <Statistics>
225 <Statistics_db-num>0</Statistics_db-num> 105 <Statistics_db-num>0</Statistics_db-num>
226 <Statistics_db-len>0</Statistics_db-len> 106 <Statistics_db-len>0</Statistics_db-len>
227 <Statistics_hsp-len>33</Statistics_hsp-len> 107 <Statistics_hsp-len>48</Statistics_hsp-len>
228 <Statistics_eff-space>183143</Statistics_eff-space> 108 <Statistics_eff-space>1477980</Statistics_eff-space>
229 <Statistics_kappa>0.041</Statistics_kappa> 109 <Statistics_kappa>0.041</Statistics_kappa>
230 <Statistics_lambda>0.267</Statistics_lambda> 110 <Statistics_lambda>0.267</Statistics_lambda>
231 <Statistics_entropy>0.14</Statistics_entropy> 111 <Statistics_entropy>0.14</Statistics_entropy>
232 </Statistics> 112 </Statistics>
233 </Iteration_stat> 113 </Iteration_stat>
234 </Iteration> 114 </Iteration>
235 <Iteration> 115 <Iteration>
236 <Iteration_iter-num>9</Iteration_iter-num> 116 <Iteration_iter-num>3</Iteration_iter-num>
237 <Iteration_query-ID>Query_3</Iteration_query-ID> 117 <Iteration_query-ID>Query_3</Iteration_query-ID>
238 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> 118 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
239 <Iteration_query-len>4301</Iteration_query-len> 119 <Iteration_query-len>4301</Iteration_query-len>
240 <Iteration_hits> 120 <Iteration_hits>
241 </Iteration_hits> 121 <Hit>
242 <Iteration_stat> 122 <Hit_num>1</Hit_num>
243 <Statistics> 123 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
244 <Statistics_db-num>0</Statistics_db-num>
245 <Statistics_db-len>0</Statistics_db-len>
246 <Statistics_hsp-len>40</Statistics_hsp-len>
247 <Statistics_eff-space>509838</Statistics_eff-space>
248 <Statistics_kappa>0.041</Statistics_kappa>
249 <Statistics_lambda>0.267</Statistics_lambda>
250 <Statistics_entropy>0.14</Statistics_entropy>
251 </Statistics>
252 </Iteration_stat>
253 <Iteration_message>No hits found</Iteration_message>
254 </Iteration>
255 <Iteration>
256 <Iteration_iter-num>10</Iteration_iter-num>
257 <Iteration_query-ID>Query_3</Iteration_query-ID>
258 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
259 <Iteration_query-len>4301</Iteration_query-len>
260 <Iteration_hits>
261 </Iteration_hits>
262 <Iteration_stat>
263 <Statistics>
264 <Statistics_db-num>0</Statistics_db-num>
265 <Statistics_db-len>0</Statistics_db-len>
266 <Statistics_hsp-len>40</Statistics_hsp-len>
267 <Statistics_eff-space>509838</Statistics_eff-space>
268 <Statistics_kappa>0.041</Statistics_kappa>
269 <Statistics_lambda>0.267</Statistics_lambda>
270 <Statistics_entropy>0.14</Statistics_entropy>
271 </Statistics>
272 </Iteration_stat>
273 <Iteration_message>No hits found</Iteration_message>
274 </Iteration>
275 <Iteration>
276 <Iteration_iter-num>11</Iteration_iter-num>
277 <Iteration_query-ID>Query_3</Iteration_query-ID>
278 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
279 <Iteration_query-len>4301</Iteration_query-len>
280 <Iteration_hits>
281 </Iteration_hits>
282 <Iteration_stat>
283 <Statistics>
284 <Statistics_db-num>0</Statistics_db-num>
285 <Statistics_db-len>0</Statistics_db-len>
286 <Statistics_hsp-len>40</Statistics_hsp-len>
287 <Statistics_eff-space>509838</Statistics_eff-space>
288 <Statistics_kappa>0.041</Statistics_kappa>
289 <Statistics_lambda>0.267</Statistics_lambda>
290 <Statistics_entropy>0.14</Statistics_entropy>
291 </Statistics>
292 </Iteration_stat>
293 <Iteration_message>No hits found</Iteration_message>
294 </Iteration>
295 <Iteration>
296 <Iteration_iter-num>12</Iteration_iter-num>
297 <Iteration_query-ID>Query_3</Iteration_query-ID>
298 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
299 <Iteration_query-len>4301</Iteration_query-len>
300 <Iteration_hits>
301 <Hit>
302 <Hit_num>1</Hit_num>
303 <Hit_id>Subject_4</Hit_id>
304 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> 124 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
305 <Hit_accession>Subject_4</Hit_accession> 125 <Hit_accession>Subject_4</Hit_accession>
306 <Hit_len>348</Hit_len> 126 <Hit_len>348</Hit_len>
307 <Hit_hsps> 127 <Hit_hsps>
308 <Hsp> 128 <Hsp>
309 <Hsp_num>1</Hsp_num> 129 <Hsp_num>1</Hsp_num>
310 <Hsp_bit-score>220.705</Hsp_bit-score> 130 <Hsp_bit-score>220.705</Hsp_bit-score>
311 <Hsp_score>561</Hsp_score> 131 <Hsp_score>561</Hsp_score>
312 <Hsp_evalue>3.21377e-67</Hsp_evalue> 132 <Hsp_evalue>3.78353e-67</Hsp_evalue>
313 <Hsp_query-from>1</Hsp_query-from> 133 <Hsp_query-from>1</Hsp_query-from>
314 <Hsp_query-to>333</Hsp_query-to> 134 <Hsp_query-to>333</Hsp_query-to>
315 <Hsp_hit-from>11</Hsp_hit-from> 135 <Hsp_hit-from>11</Hsp_hit-from>
316 <Hsp_hit-to>121</Hsp_hit-to> 136 <Hsp_hit-to>121</Hsp_hit-to>
317 <Hsp_query-frame>1</Hsp_query-frame> 137 <Hsp_query-frame>1</Hsp_query-frame>
326 </Hsp> 146 </Hsp>
327 <Hsp> 147 <Hsp>
328 <Hsp_num>2</Hsp_num> 148 <Hsp_num>2</Hsp_num>
329 <Hsp_bit-score>127.487</Hsp_bit-score> 149 <Hsp_bit-score>127.487</Hsp_bit-score>
330 <Hsp_score>319</Hsp_score> 150 <Hsp_score>319</Hsp_score>
331 <Hsp_evalue>1.95079e-35</Hsp_evalue> 151 <Hsp_evalue>4.12812e-35</Hsp_evalue>
332 <Hsp_query-from>3174</Hsp_query-from> 152 <Hsp_query-from>3174</Hsp_query-from>
333 <Hsp_query-to>3368</Hsp_query-to> 153 <Hsp_query-to>3368</Hsp_query-to>
334 <Hsp_hit-from>248</Hsp_hit-from> 154 <Hsp_hit-from>248</Hsp_hit-from>
335 <Hsp_hit-to>312</Hsp_hit-to> 155 <Hsp_hit-to>312</Hsp_hit-to>
336 <Hsp_query-frame>3</Hsp_query-frame> 156 <Hsp_query-frame>3</Hsp_query-frame>
345 </Hsp> 165 </Hsp>
346 <Hsp> 166 <Hsp>
347 <Hsp_num>3</Hsp_num> 167 <Hsp_num>3</Hsp_num>
348 <Hsp_bit-score>121.709</Hsp_bit-score> 168 <Hsp_bit-score>121.709</Hsp_bit-score>
349 <Hsp_score>304</Hsp_score> 169 <Hsp_score>304</Hsp_score>
350 <Hsp_evalue>1.62516e-33</Hsp_evalue> 170 <Hsp_evalue>3.99023e-33</Hsp_evalue>
351 <Hsp_query-from>2855</Hsp_query-from> 171 <Hsp_query-from>2855</Hsp_query-from>
352 <Hsp_query-to>3031</Hsp_query-to> 172 <Hsp_query-to>3031</Hsp_query-to>
353 <Hsp_hit-from>177</Hsp_hit-from> 173 <Hsp_hit-from>177</Hsp_hit-from>
354 <Hsp_hit-to>235</Hsp_hit-to> 174 <Hsp_hit-to>235</Hsp_hit-to>
355 <Hsp_query-frame>2</Hsp_query-frame> 175 <Hsp_query-frame>2</Hsp_query-frame>
364 </Hsp> 184 </Hsp>
365 <Hsp> 185 <Hsp>
366 <Hsp_num>4</Hsp_num> 186 <Hsp_num>4</Hsp_num>
367 <Hsp_bit-score>97.0561</Hsp_bit-score> 187 <Hsp_bit-score>97.0561</Hsp_bit-score>
368 <Hsp_score>240</Hsp_score> 188 <Hsp_score>240</Hsp_score>
369 <Hsp_evalue>1.16473e-25</Hsp_evalue> 189 <Hsp_evalue>7.46148e-25</Hsp_evalue>
370 <Hsp_query-from>1404</Hsp_query-from> 190 <Hsp_query-from>1404</Hsp_query-from>
371 <Hsp_query-to>1580</Hsp_query-to> 191 <Hsp_query-to>1580</Hsp_query-to>
372 <Hsp_hit-from>119</Hsp_hit-from> 192 <Hsp_hit-from>119</Hsp_hit-from>
373 <Hsp_hit-to>177</Hsp_hit-to> 193 <Hsp_hit-to>177</Hsp_hit-to>
374 <Hsp_query-frame>3</Hsp_query-frame> 194 <Hsp_query-frame>3</Hsp_query-frame>
383 </Hsp> 203 </Hsp>
384 <Hsp> 204 <Hsp>
385 <Hsp_num>5</Hsp_num> 205 <Hsp_num>5</Hsp_num>
386 <Hsp_bit-score>56.9954</Hsp_bit-score> 206 <Hsp_bit-score>56.9954</Hsp_bit-score>
387 <Hsp_score>136</Hsp_score> 207 <Hsp_score>136</Hsp_score>
388 <Hsp_evalue>1.23645e-12</Hsp_evalue> 208 <Hsp_evalue>1.12842e-11</Hsp_evalue>
389 <Hsp_query-from>4222</Hsp_query-from> 209 <Hsp_query-from>4222</Hsp_query-from>
390 <Hsp_query-to>4299</Hsp_query-to> 210 <Hsp_query-to>4299</Hsp_query-to>
391 <Hsp_hit-from>312</Hsp_hit-from> 211 <Hsp_hit-from>312</Hsp_hit-from>
392 <Hsp_hit-to>337</Hsp_hit-to> 212 <Hsp_hit-to>337</Hsp_hit-to>
393 <Hsp_query-frame>1</Hsp_query-frame> 213 <Hsp_query-frame>1</Hsp_query-frame>
405 </Iteration_hits> 225 </Iteration_hits>
406 <Iteration_stat> 226 <Iteration_stat>
407 <Statistics> 227 <Statistics>
408 <Statistics_db-num>0</Statistics_db-num> 228 <Statistics_db-num>0</Statistics_db-num>
409 <Statistics_db-len>0</Statistics_db-len> 229 <Statistics_db-len>0</Statistics_db-len>
410 <Statistics_hsp-len>40</Statistics_hsp-len> 230 <Statistics_hsp-len>55</Statistics_hsp-len>
411 <Statistics_eff-space>509838</Statistics_eff-space> 231 <Statistics_eff-space>4240106</Statistics_eff-space>
412 <Statistics_kappa>0.041</Statistics_kappa> 232 <Statistics_kappa>0.041</Statistics_kappa>
413 <Statistics_lambda>0.267</Statistics_lambda> 233 <Statistics_lambda>0.267</Statistics_lambda>
414 <Statistics_entropy>0.14</Statistics_entropy> 234 <Statistics_entropy>0.14</Statistics_entropy>
415 </Statistics> 235 </Statistics>
416 </Iteration_stat> 236 </Iteration_stat>
417 </Iteration> 237 </Iteration>
418 <Iteration> 238 <Iteration>
419 <Iteration_iter-num>13</Iteration_iter-num> 239 <Iteration_iter-num>4</Iteration_iter-num>
420 <Iteration_query-ID>Query_4</Iteration_query-ID> 240 <Iteration_query-ID>Query_4</Iteration_query-ID>
421 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> 241 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
422 <Iteration_query-len>983</Iteration_query-len> 242 <Iteration_query-len>983</Iteration_query-len>
423 <Iteration_hits> 243 <Iteration_hits>
424 </Iteration_hits> 244 <Hit>
425 <Iteration_stat> 245 <Hit_num>1</Hit_num>
426 <Statistics> 246 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
427 <Statistics_db-num>0</Statistics_db-num>
428 <Statistics_db-len>0</Statistics_db-len>
429 <Statistics_hsp-len>29</Statistics_hsp-len>
430 <Statistics_eff-space>112346</Statistics_eff-space>
431 <Statistics_kappa>0.041</Statistics_kappa>
432 <Statistics_lambda>0.267</Statistics_lambda>
433 <Statistics_entropy>0.14</Statistics_entropy>
434 </Statistics>
435 </Iteration_stat>
436 <Iteration_message>No hits found</Iteration_message>
437 </Iteration>
438 <Iteration>
439 <Iteration_iter-num>14</Iteration_iter-num>
440 <Iteration_query-ID>Query_4</Iteration_query-ID>
441 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
442 <Iteration_query-len>983</Iteration_query-len>
443 <Iteration_hits>
444 </Iteration_hits>
445 <Iteration_stat>
446 <Statistics>
447 <Statistics_db-num>0</Statistics_db-num>
448 <Statistics_db-len>0</Statistics_db-len>
449 <Statistics_hsp-len>29</Statistics_hsp-len>
450 <Statistics_eff-space>112346</Statistics_eff-space>
451 <Statistics_kappa>0.041</Statistics_kappa>
452 <Statistics_lambda>0.267</Statistics_lambda>
453 <Statistics_entropy>0.14</Statistics_entropy>
454 </Statistics>
455 </Iteration_stat>
456 <Iteration_message>No hits found</Iteration_message>
457 </Iteration>
458 <Iteration>
459 <Iteration_iter-num>15</Iteration_iter-num>
460 <Iteration_query-ID>Query_4</Iteration_query-ID>
461 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
462 <Iteration_query-len>983</Iteration_query-len>
463 <Iteration_hits>
464 </Iteration_hits>
465 <Iteration_stat>
466 <Statistics>
467 <Statistics_db-num>0</Statistics_db-num>
468 <Statistics_db-len>0</Statistics_db-len>
469 <Statistics_hsp-len>29</Statistics_hsp-len>
470 <Statistics_eff-space>112346</Statistics_eff-space>
471 <Statistics_kappa>0.041</Statistics_kappa>
472 <Statistics_lambda>0.267</Statistics_lambda>
473 <Statistics_entropy>0.14</Statistics_entropy>
474 </Statistics>
475 </Iteration_stat>
476 <Iteration_message>No hits found</Iteration_message>
477 </Iteration>
478 <Iteration>
479 <Iteration_iter-num>16</Iteration_iter-num>
480 <Iteration_query-ID>Query_4</Iteration_query-ID>
481 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
482 <Iteration_query-len>983</Iteration_query-len>
483 <Iteration_hits>
484 <Hit>
485 <Hit_num>1</Hit_num>
486 <Hit_id>Subject_4</Hit_id>
487 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> 247 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
488 <Hit_accession>Subject_4</Hit_accession> 248 <Hit_accession>Subject_4</Hit_accession>
489 <Hit_len>348</Hit_len> 249 <Hit_len>348</Hit_len>
490 <Hit_hsps> 250 <Hit_hsps>
491 <Hsp> 251 <Hsp>
512 </Iteration_hits> 272 </Iteration_hits>
513 <Iteration_stat> 273 <Iteration_stat>
514 <Statistics> 274 <Statistics>
515 <Statistics_db-num>0</Statistics_db-num> 275 <Statistics_db-num>0</Statistics_db-num>
516 <Statistics_db-len>0</Statistics_db-len> 276 <Statistics_db-len>0</Statistics_db-len>
517 <Statistics_hsp-len>29</Statistics_hsp-len> 277 <Statistics_hsp-len>44</Statistics_hsp-len>
518 <Statistics_eff-space>112346</Statistics_eff-space> 278 <Statistics_eff-space>883243</Statistics_eff-space>
519 <Statistics_kappa>0.041</Statistics_kappa> 279 <Statistics_kappa>0.041</Statistics_kappa>
520 <Statistics_lambda>0.267</Statistics_lambda> 280 <Statistics_lambda>0.267</Statistics_lambda>
521 <Statistics_entropy>0.14</Statistics_entropy> 281 <Statistics_entropy>0.14</Statistics_entropy>
522 </Statistics> 282 </Statistics>
523 </Iteration_stat> 283 </Iteration_stat>
524 </Iteration> 284 </Iteration>
525 <Iteration> 285 <Iteration>
526 <Iteration_iter-num>17</Iteration_iter-num> 286 <Iteration_iter-num>5</Iteration_iter-num>
527 <Iteration_query-ID>Query_5</Iteration_query-ID> 287 <Iteration_query-ID>Query_5</Iteration_query-ID>
528 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> 288 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
529 <Iteration_query-len>1047</Iteration_query-len> 289 <Iteration_query-len>1047</Iteration_query-len>
530 <Iteration_hits> 290 <Iteration_hits>
531 </Iteration_hits> 291 <Hit>
532 <Iteration_stat> 292 <Hit_num>1</Hit_num>
533 <Statistics> 293 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
534 <Statistics_db-num>0</Statistics_db-num>
535 <Statistics_db-len>0</Statistics_db-len>
536 <Statistics_hsp-len>30</Statistics_hsp-len>
537 <Statistics_eff-space>119944</Statistics_eff-space>
538 <Statistics_kappa>0.041</Statistics_kappa>
539 <Statistics_lambda>0.267</Statistics_lambda>
540 <Statistics_entropy>0.14</Statistics_entropy>
541 </Statistics>
542 </Iteration_stat>
543 <Iteration_message>No hits found</Iteration_message>
544 </Iteration>
545 <Iteration>
546 <Iteration_iter-num>18</Iteration_iter-num>
547 <Iteration_query-ID>Query_5</Iteration_query-ID>
548 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
549 <Iteration_query-len>1047</Iteration_query-len>
550 <Iteration_hits>
551 </Iteration_hits>
552 <Iteration_stat>
553 <Statistics>
554 <Statistics_db-num>0</Statistics_db-num>
555 <Statistics_db-len>0</Statistics_db-len>
556 <Statistics_hsp-len>30</Statistics_hsp-len>
557 <Statistics_eff-space>119944</Statistics_eff-space>
558 <Statistics_kappa>0.041</Statistics_kappa>
559 <Statistics_lambda>0.267</Statistics_lambda>
560 <Statistics_entropy>0.14</Statistics_entropy>
561 </Statistics>
562 </Iteration_stat>
563 <Iteration_message>No hits found</Iteration_message>
564 </Iteration>
565 <Iteration>
566 <Iteration_iter-num>19</Iteration_iter-num>
567 <Iteration_query-ID>Query_5</Iteration_query-ID>
568 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
569 <Iteration_query-len>1047</Iteration_query-len>
570 <Iteration_hits>
571 </Iteration_hits>
572 <Iteration_stat>
573 <Statistics>
574 <Statistics_db-num>0</Statistics_db-num>
575 <Statistics_db-len>0</Statistics_db-len>
576 <Statistics_hsp-len>30</Statistics_hsp-len>
577 <Statistics_eff-space>119944</Statistics_eff-space>
578 <Statistics_kappa>0.041</Statistics_kappa>
579 <Statistics_lambda>0.267</Statistics_lambda>
580 <Statistics_entropy>0.14</Statistics_entropy>
581 </Statistics>
582 </Iteration_stat>
583 <Iteration_message>No hits found</Iteration_message>
584 </Iteration>
585 <Iteration>
586 <Iteration_iter-num>20</Iteration_iter-num>
587 <Iteration_query-ID>Query_5</Iteration_query-ID>
588 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
589 <Iteration_query-len>1047</Iteration_query-len>
590 <Iteration_hits>
591 <Hit>
592 <Hit_num>1</Hit_num>
593 <Hit_id>Subject_4</Hit_id>
594 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> 294 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
595 <Hit_accession>Subject_4</Hit_accession> 295 <Hit_accession>Subject_4</Hit_accession>
596 <Hit_len>348</Hit_len> 296 <Hit_len>348</Hit_len>
597 <Hit_hsps> 297 <Hit_hsps>
598 <Hsp> 298 <Hsp>
619 </Iteration_hits> 319 </Iteration_hits>
620 <Iteration_stat> 320 <Iteration_stat>
621 <Statistics> 321 <Statistics>
622 <Statistics_db-num>0</Statistics_db-num> 322 <Statistics_db-num>0</Statistics_db-num>
623 <Statistics_db-len>0</Statistics_db-len> 323 <Statistics_db-len>0</Statistics_db-len>
624 <Statistics_hsp-len>30</Statistics_hsp-len> 324 <Statistics_hsp-len>45</Statistics_hsp-len>
625 <Statistics_eff-space>119944</Statistics_eff-space> 325 <Statistics_eff-space>947568</Statistics_eff-space>
626 <Statistics_kappa>0.041</Statistics_kappa> 326 <Statistics_kappa>0.041</Statistics_kappa>
627 <Statistics_lambda>0.267</Statistics_lambda> 327 <Statistics_lambda>0.267</Statistics_lambda>
628 <Statistics_entropy>0.14</Statistics_entropy> 328 <Statistics_entropy>0.14</Statistics_entropy>
629 </Statistics> 329 </Statistics>
630 </Iteration_stat> 330 </Iteration_stat>
631 </Iteration> 331 </Iteration>
632 <Iteration> 332 <Iteration>
633 <Iteration_iter-num>21</Iteration_iter-num> 333 <Iteration_iter-num>6</Iteration_iter-num>
634 <Iteration_query-ID>Query_6</Iteration_query-ID> 334 <Iteration_query-ID>Query_6</Iteration_query-ID>
635 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> 335 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
636 <Iteration_query-len>1344</Iteration_query-len> 336 <Iteration_query-len>1344</Iteration_query-len>
637 <Iteration_hits> 337 <Iteration_hits>
638 </Iteration_hits> 338 <Hit>
639 <Iteration_stat> 339 <Hit_num>1</Hit_num>
640 <Statistics> 340 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
641 <Statistics_db-num>0</Statistics_db-num>
642 <Statistics_db-len>0</Statistics_db-len>
643 <Statistics_hsp-len>32</Statistics_hsp-len>
644 <Statistics_eff-space>155584</Statistics_eff-space>
645 <Statistics_kappa>0.041</Statistics_kappa>
646 <Statistics_lambda>0.267</Statistics_lambda>
647 <Statistics_entropy>0.14</Statistics_entropy>
648 </Statistics>
649 </Iteration_stat>
650 <Iteration_message>No hits found</Iteration_message>
651 </Iteration>
652 <Iteration>
653 <Iteration_iter-num>22</Iteration_iter-num>
654 <Iteration_query-ID>Query_6</Iteration_query-ID>
655 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
656 <Iteration_query-len>1344</Iteration_query-len>
657 <Iteration_hits>
658 </Iteration_hits>
659 <Iteration_stat>
660 <Statistics>
661 <Statistics_db-num>0</Statistics_db-num>
662 <Statistics_db-len>0</Statistics_db-len>
663 <Statistics_hsp-len>32</Statistics_hsp-len>
664 <Statistics_eff-space>155584</Statistics_eff-space>
665 <Statistics_kappa>0.041</Statistics_kappa>
666 <Statistics_lambda>0.267</Statistics_lambda>
667 <Statistics_entropy>0.14</Statistics_entropy>
668 </Statistics>
669 </Iteration_stat>
670 <Iteration_message>No hits found</Iteration_message>
671 </Iteration>
672 <Iteration>
673 <Iteration_iter-num>23</Iteration_iter-num>
674 <Iteration_query-ID>Query_6</Iteration_query-ID>
675 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
676 <Iteration_query-len>1344</Iteration_query-len>
677 <Iteration_hits>
678 </Iteration_hits>
679 <Iteration_stat>
680 <Statistics>
681 <Statistics_db-num>0</Statistics_db-num>
682 <Statistics_db-len>0</Statistics_db-len>
683 <Statistics_hsp-len>32</Statistics_hsp-len>
684 <Statistics_eff-space>155584</Statistics_eff-space>
685 <Statistics_kappa>0.041</Statistics_kappa>
686 <Statistics_lambda>0.267</Statistics_lambda>
687 <Statistics_entropy>0.14</Statistics_entropy>
688 </Statistics>
689 </Iteration_stat>
690 <Iteration_message>No hits found</Iteration_message>
691 </Iteration>
692 <Iteration>
693 <Iteration_iter-num>24</Iteration_iter-num>
694 <Iteration_query-ID>Query_6</Iteration_query-ID>
695 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
696 <Iteration_query-len>1344</Iteration_query-len>
697 <Iteration_hits>
698 <Hit>
699 <Hit_num>1</Hit_num>
700 <Hit_id>Subject_4</Hit_id>
701 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> 341 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
702 <Hit_accession>Subject_4</Hit_accession> 342 <Hit_accession>Subject_4</Hit_accession>
703 <Hit_len>348</Hit_len> 343 <Hit_len>348</Hit_len>
704 <Hit_hsps> 344 <Hit_hsps>
705 <Hsp> 345 <Hsp>
726 </Iteration_hits> 366 </Iteration_hits>
727 <Iteration_stat> 367 <Iteration_stat>
728 <Statistics> 368 <Statistics>
729 <Statistics_db-num>0</Statistics_db-num> 369 <Statistics_db-num>0</Statistics_db-num>
730 <Statistics_db-len>0</Statistics_db-len> 370 <Statistics_db-len>0</Statistics_db-len>
731 <Statistics_hsp-len>32</Statistics_hsp-len> 371 <Statistics_hsp-len>47</Statistics_hsp-len>
732 <Statistics_eff-space>155584</Statistics_eff-space> 372 <Statistics_eff-space>1246709</Statistics_eff-space>
733 <Statistics_kappa>0.041</Statistics_kappa> 373 <Statistics_kappa>0.041</Statistics_kappa>
734 <Statistics_lambda>0.267</Statistics_lambda> 374 <Statistics_lambda>0.267</Statistics_lambda>
735 <Statistics_entropy>0.14</Statistics_entropy> 375 <Statistics_entropy>0.14</Statistics_entropy>
736 </Statistics> 376 </Statistics>
737 </Iteration_stat> 377 </Iteration_stat>