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comparison mergeCols.xml @ 0:11de536c87b1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/merge_cols commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author devteam
date Mon, 09 Nov 2015 11:45:18 -0500
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1 <tool id="mergeCols1" name="Merge Columns" version="1.0.1">
2 <description>together</description>
3 <command interpreter="python">
4 mergeCols.py
5 "${input1}"
6 "${out_file1}"
7 "${col1}"
8 "${col2}"
9 #for $col in $columns
10 ${col.datacol}
11 #end for
12 </command>
13 <inputs>
14 <param format="tabular" name="input1" type="data" label="Select data" help="Dataset missing? See TIP below."/>
15 <param name="col1" label="Merge column" type="data_column" data_ref="input1" />
16 <param name="col2" label="with column" type="data_column" data_ref="input1" help="Need to add more columns? Use controls below."/>
17 <repeat name="columns" title="Columns">
18 <param name="datacol" label="Add column" type="data_column" data_ref="input1" />
19 </repeat>
20 </inputs>
21 <outputs>
22 <data format="tabular" name="out_file1" />
23 </outputs>
24 <tests>
25 <test>
26 <param name="input1" value="1.bed"/>
27 <param name="col1" value="4" />
28 <param name="col2" value="1" />
29 <param name="datacol" value="6" />
30 <output name="out_file1" file="mergeCols.dat"/>
31 </test>
32 </tests>
33 <help>
34
35 .. class:: infomark
36
37 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
38
39 -----
40
41 **What it does**
42
43 This tool merges columns together. Any number of valid columns can be merged in any order.
44
45 -----
46
47 **Example**
48
49 Input dataset (five columns: c1, c2, c3, c4, and c5)::
50
51 1 10 1000 gene1 chr
52 2 100 1500 gene2 chr
53
54 merging columns "**c5,c1**" will return::
55
56 1 10 1000 gene1 chr chr1
57 2 100 1500 gene2 chr chr2
58
59 .. class:: warningmark
60
61 Note that all original columns are preserved and the result of merge is added as the rightmost column.
62 </help>
63 </tool>