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comparison mapping_to_ucsc.xml @ 1:7293ec9e0afc draft default tip

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planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:25:02 -0400
parents cf8d47e49c21
children
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0:cf8d47e49c21 1:7293ec9e0afc
30 <option value="coverage">Read coverage</option> 30 <option value="coverage">Read coverage</option>
31 <option value="both">Both</option> 31 <option value="both">Both</option>
32 </param> 32 </param>
33 <when value = "coverage"> 33 <when value = "coverage">
34 <param name="coverage_col" type="data_column" data_ref="input" numerical="True" label="Numerical column for read coverage" /> 34 <param name="coverage_col" type="data_column" data_ref="input" numerical="True" label="Numerical column for read coverage" />
35 <param name="cname" type="text" size="15" value="User Track" label="Coverage track name"> 35 <param name="cname" type="text" value="User Track" label="Coverage track name">
36 <validator type="length" max="15"/> 36 <validator type="length" max="15"/>
37 </param> 37 </param>
38 <param name="cdescription" type="text" value="User Supplied Coverage Track (from Galaxy)" label="Coverage track description"> 38 <param name="cdescription" type="text" value="User Supplied Coverage Track (from Galaxy)" label="Coverage track description">
39 <validator type="length" max="60" size="15"/> 39 <validator type="length" max="60"/>
40 </param> 40 </param>
41 <param label="Coverage track Color" name="ccolor" type="select"> 41 <param label="Coverage track Color" name="ccolor" type="select">
42 <option selected="yes" value="0-0-0">Black</option> 42 <option selected="yes" value="0-0-0">Black</option>
43 <option value="255-0-0">Red</option> 43 <option value="255-0-0">Red</option>
44 <option value="0-255-0">Green</option> 44 <option value="0-255-0">Green</option>
65 <!-- 65 <!--
66 <param name="col1" type="data_column" data_ref="input" label="Column containing the reference nucleotide" /> 66 <param name="col1" type="data_column" data_ref="input" label="Column containing the reference nucleotide" />
67 --> 67 -->
68 <param name="col2" type="data_column" data_ref="input" label="Column containing the read nucleotide" /> 68 <param name="col2" type="data_column" data_ref="input" label="Column containing the read nucleotide" />
69 <!-- 69 <!--
70 <param name="sname" type="text" size="15" value="User Track-2" label="SNP track name"> 70 <param name="sname" type="text" value="User Track-2" label="SNP track name">
71 <validator type="length" max="15"/> 71 <validator type="length" max="15"/>
72 </param> 72 </param>
73 --> 73 -->
74 <param name="sdescription" type="text" value="User Supplied Track (from Galaxy)" label="SNP track description"> 74 <param name="sdescription" type="text" value="User Supplied Track (from Galaxy)" label="SNP track description">
75 <validator type="length" max="60" size="15"/> 75 <validator type="length" max="60"/>
76 </param> 76 </param>
77 <param label="SNP track Visibility" name="svisibility" type="select"> 77 <param label="SNP track Visibility" name="svisibility" type="select">
78 <option selected="yes" value="1">Dense</option> 78 <option selected="yes" value="1">Dense</option>
79 <option value="2">Full</option> 79 <option value="2">Full</option>
80 <option value="3">Pack</option> 80 <option value="3">Pack</option>
83 </param> 83 </param>
84 </when> 84 </when>
85 85
86 <when value = "both"> 86 <when value = "both">
87 <param name="coverage_col" type="data_column" data_ref="input" numerical="True" label="Numerical column for read coverage" /> 87 <param name="coverage_col" type="data_column" data_ref="input" numerical="True" label="Numerical column for read coverage" />
88 <param name="cname" type="text" size="15" value="User Track" label="Coverage track name"> 88 <param name="cname" type="text" value="User Track" label="Coverage track name">
89 <validator type="length" max="15"/> 89 <validator type="length" max="15"/>
90 </param> 90 </param>
91 <param name="cdescription" type="text" size="15" value="User Supplied Track (from Galaxy)" label="Coverage track description"> 91 <param name="cdescription" type="text" value="User Supplied Track (from Galaxy)" label="Coverage track description">
92 <validator type="length" max="60"/> 92 <validator type="length" max="60"/>
93 </param> 93 </param>
94 <param label="Coverage track Color" name="ccolor" type="select"> 94 <param label="Coverage track Color" name="ccolor" type="select">
95 <option selected="yes" value="0-0-0">Black</option> 95 <option selected="yes" value="0-0-0">Black</option>
96 <option value="255-0-0">Red</option> 96 <option value="255-0-0">Red</option>
115 <!-- 115 <!--
116 <param name="col1" type="data_column" data_ref="input" label="Column containing the reference nucleotide" /> 116 <param name="col1" type="data_column" data_ref="input" label="Column containing the reference nucleotide" />
117 --> 117 -->
118 <param name="col2" type="data_column" data_ref="input" label="Column containing the read nucleotide" /> 118 <param name="col2" type="data_column" data_ref="input" label="Column containing the read nucleotide" />
119 <!-- 119 <!--
120 <param name="sname" type="text" size="15" value="User Track-2" label="SNP track name"> 120 <param name="sname" type="text" value="User Track-2" label="SNP track name">
121 <validator type="length" max="15"/> 121 <validator type="length" max="15"/>
122 </param> 122 </param>
123 --> 123 -->
124 <param name="sdescription" type="text" size="15" value="User Supplied Track (from Galaxy)" label="SNP track description"> 124 <param name="sdescription" type="text" value="User Supplied Track (from Galaxy)" label="SNP track description">
125 <validator type="length" max="60"/> 125 <validator type="length" max="60"/>
126 </param> 126 </param>
127 <param label="SNP track Visibility" name="svisibility" type="select"> 127 <param label="SNP track Visibility" name="svisibility" type="select">
128 <option selected="yes" value="1">Dense</option> 128 <option selected="yes" value="1">Dense</option>
129 <option value="2">Full</option> 129 <option value="2">Full</option>