# HG changeset patch
# User iuc
# Date 1769106479 0
# Node ID 15b1af922236725350fae6fd4cb915e59c933adc
# Parent  da6f44d06921685bd4e070f5407d1edc5252f7bf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lastz commit 2f47e1d9794907e95166dbd039f54139d5ca5595

diff -r da6f44d06921 -r 15b1af922236 lastz.xml
--- a/lastz.xml	Sun Jul 02 12:10:29 2023 +0000
+++ b/lastz.xml	Thu Jan 22 18:27:59 2026 +0000
@@ -259,6 +259,8 @@
             '--format=${output_format.out.maf_type}'
         #elif str( $output_format.out.format ) == "blastn":
             --format=BLASTN-
+        #elif str( $output_format.out.format ) == "paf":
+            --format=PAF-
         #elif str( $output_format.out.format ) == "general_full":
             '--format=general-:${output_format.out.fields}'
         #elif str( $output_format.out.format ) == "differences":
@@ -500,6 +502,7 @@
                     <option value="general_full">Customized general (--format=general[:fields])</option>
                     <option value="maf">MAF (--format=maf)</option>
                     <option value="blastn">blastn (--format=BLASTN)</option>
+                    <option value="paf">paf (--format=PAF)</option>
                     <option value="differences">Differences (--format=differences)</option>
                 </param>
                 <when value="bam">
@@ -576,6 +579,9 @@
                 <when value="blastn">
                     <!-- Do nothing -->
                 </when>
+                <when value="paf">
+                    <!-- Do nothing -->
+                </when>
                 <when value="differences">
                     <!-- Do nothing -->
                 </when>
@@ -586,6 +592,7 @@
     <outputs>
         <data format="tabular" name="output" label="${tool.name} on ${on_string}: mapped reads">
             <change_format>
+                <when input="output_format.out.format" value="paf" format="paf" />
                 <when input="output_format.out.format" value="bam" format="bam" />
                 <when input="output_format.out.format" value="maf" format="maf" />
                 <when input="output_format.out.format" value="differences" format="interval" />