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view test-data/lastz_d_test1.out @ 5:ec4affe27298 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit 25c49a61a5358cc7ab016fb5847328af7e67a24c"
author iuc
date Fri, 02 Apr 2021 17:18:09 +0000
parents 8e9252994649
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# (a LASTZ scoring set, created by "LASTZ --infer")

bad_score          = X:-1764 # used for sub[X][*] and sub[*][X]
fill_score         = -176    # used when sub[*][*] not otherwise defined
gap_open_penalty   = 573
gap_extend_penalty = 43

      A     C     G     T
A    73   -83   -52  -100
C   -83   100  -176   -52
G   -52  -176   100   -83
T  -100   -52   -83    73