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view test-data/score_file.txt @ 10:37ba0585e60b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lastz commit 04ec440aef00477a46c89fdb9b74e9bade5ffd94
author iuc
date Thu, 05 Feb 2026 12:51:47 +0000
parents 8e9252994649
children
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# This matches the default scoring set for BLASTZ
    
bad_score          = X:-1000  # used for sub['X'][*] and sub[*]['X']
fill_score         = -100     # used when sub[*][*] is not defined
gap_open_penalty   =  400
gap_extend_penalty =   30

     A     C     G     T
A   91  -114   -31  -123
C -114   100  -125   -31
G  -31  -125   100  -114
T -123   -31  -114    91