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comparison lastz_d.xml @ 10:37ba0585e60b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lastz commit 04ec440aef00477a46c89fdb9b74e9bade5ffd94
author iuc
date Thu, 05 Feb 2026 12:51:47 +0000
parents da6f44d06921
children
comparison
equal deleted inserted replaced
9:15b1af922236 10:37ba0585e60b
1 <tool id="lastz_d_wrapper" name="LASTZ_D" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="lastz_d_wrapper" name="LASTZ_D" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>: estimate substitution scores matrix</description> 2 <description>estimate substitution scores matrix</description>
3 <macros> 3 <macros>
4 <import>lastz_macros.xml</import> 4 <import>lastz_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools"/> 6 <expand macro="bio_tools"/>
7 <requirements> 7 <expand macro="requirements"/>
8 <requirement type="package" version="@TOOL_VERSION@">lastz</requirement>
9 <requirement type="package" version="1.0.8">bzip2</requirement>
10 </requirements>
11 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
12 lastz_D 9 lastz_D
13 @TARGET_INPUT_COMMAND_LINE@ 10 @TARGET_INPUT_COMMAND_LINE@
14 @query_input@ 11 @query_input@
15 #if $score_file: 12 #if $score_file:
28 <outputs> 25 <outputs>
29 <data format="txt" name="output" label="${tool.name} on ${on_string}: substitution matrix"/> 26 <data format="txt" name="output" label="${tool.name} on ${on_string}: substitution matrix"/>
30 </outputs> 27 </outputs>
31 <tests> 28 <tests>
32 <test> 29 <test>
33 <param name="ref_source" value="history" /> 30 <conditional name="source">
34 <param name="target" value="chrM_human.fa" /> 31 <param name="ref_source" value="history" />
32 <param name="target" value="chrM_human.fa" />
33 </conditional>
35 <param name="query" value="chrM_mouse.fa" /> 34 <param name="query" value="chrM_mouse.fa" />
36 <output name="output" value="lastz_d_test1.out" /> 35 <output name="output" value="lastz_d_test1.out" />
37 </test> 36 </test>
38 <test> 37 <test>
39 <param name="ref_source" value="history" /> 38 <conditional name="source">
40 <param name="target" value="chrM_human.fa" /> 39 <param name="ref_source" value="history" />
40 <param name="target" value="chrM_human.fa" />
41 </conditional>
41 <param name="query" value="chrM_mouse.fa" /> 42 <param name="query" value="chrM_mouse.fa" />
42 <param name="score_file" value="lastz_d_ctrl_file.txt" /> 43 <param name="score_file" value="lastz_d_ctrl_file.txt" />
43 <output name="output" value="lastz_d_test2.out" /> 44 <output name="output" value="lastz_d_test2.out" />
44 </test> 45 </test>
45 </tests> 46 </tests>