Mercurial > repos > devteam > kraken_translate

diff kraken-translate.xml @ 3:443674e0ca7f draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 19:41:51 -0500
parents a080250b8326
children e190a178e49f
line wrap: on
line diff
--- a/kraken-translate.xml	Wed Jul 15 15:22:31 2015 -0400
+++ b/kraken-translate.xml	Fri Dec 18 19:41:51 2015 -0500
@@ -5,6 +5,9 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <expand macro="version_command" />
     <command>
         <![CDATA[
         @SET_DATABASE_PATH@ &&
@@ -19,6 +22,14 @@
     <outputs>
         <data format="tabular" label="${tool.name} on ${on_string}: Translated classification" name="translated" />
     </outputs>
+    <tests>
+        <test>
+            <param name="input" value="kraken_translate_test1.tab" ftype="tabular"/>
+            <param name="mpa-format" value="false"/>
+            <param name="kraken_database" value="test_db"/>
+            <output name="translated" file="kraken_translate_test1_output.tab" ftype="tabular"/>
+        </test>
+    </tests>
     <help>
         <![CDATA[
 
@@ -45,8 +56,5 @@
 Taxonomy assignments above the superkingdom rank are represented as just "root" when using the ``--mpa-report`` option with kraken-translate.
         ]]>
     </help>
-    <expand macro="requirements" />
-    <expand macro="stdio" />
-    <expand macro="version_command" />
     <expand macro="citations" />
 </tool>