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comparison kraken-report.xml @ 4:9709eedcff4b draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 19:41:35 -0500
parents 45ced9c12e18
children e9e42bf5c6a8
comparison
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3:a539aeea69fc 4:9709eedcff4b
1 <tool id="kraken-report" name="Kraken-report" version="1.1.0"> 1 <tool id="kraken-report" name="Kraken-report" version="1.1.0">
2 <description> 2 <description>
3 view a sample report of your classification 3 view a sample report of your classification
4 </description> 4 </description>
5
5 <macros> 6 <macros>
6 <import>macros.xml</import> 7 <import>macros.xml</import>
7 </macros> 8 </macros>
9 <expand macro="requirements" />
10 <expand macro="stdio" />
11 <expand macro="version_command" />
8 <command> 12 <command>
9 <![CDATA[ 13 <![CDATA[
10 @SET_DATABASE_PATH@ && 14 @SET_DATABASE_PATH@ &&
11 kraken-report @INPUT_DATABASE@ "${kraken_output}" > "$output_report" 15 kraken-report @INPUT_DATABASE@ "${kraken_output}" > "$output_report"
12 ]]> 16 ]]>
16 <expand macro="input_database" /> 20 <expand macro="input_database" />
17 </inputs> 21 </inputs>
18 <outputs> 22 <outputs>
19 <data format="tabular" name="output_report" /> 23 <data format="tabular" name="output_report" />
20 </outputs> 24 </outputs>
25 <tests>
26 <test>
27 <param name="kraken_output" value="kraken_report_test1.tab" ftype="tabular"/>
28 <param name="kraken_database" value="test_db"/>
29 <output name="output_report" file="kraken_report_test1_output.tab" ftype="tabular"/>
30 </test>
31 </tests>
32
21 <help> 33 <help>
22 <![CDATA[ 34 <![CDATA[
23 35
24 .. class:: warningmark 36 .. class:: warningmark
25 37
40 52
41 The scientific names are indented using spaces, according to the tree 53 The scientific names are indented using spaces, according to the tree
42 structure specified by the taxonomy. 54 structure specified by the taxonomy.
43 ]]> 55 ]]>
44 </help> 56 </help>
45 <expand macro="version_command" />
46 <expand macro="requirements" />
47 <expand macro="stdio" />
48 <expand macro="citations" /> 57 <expand macro="citations" />
49 </tool> 58 </tool>