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comparison macros.xml @ 14:a44cdb52201c draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 1590e274eaa41ea77a6017111f9122e0a58aa75d-dirty"
author iuc
date Tue, 03 Dec 2019 18:29:41 +0000
parents 96f11a194da9
children
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13:96f11a194da9 14:a44cdb52201c
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@WRAPPER_VERSION@">1.3.0</token> 3 <token name="@WRAPPER_VERSION@">1.3.1</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="0.10.6_eaf8fb68">kraken</requirement> 6 <requirement type="package" version="1.1.1">kraken</requirement>
7 </requirements> 7 </requirements>
8 </xml> 8 </xml>
9 <xml name="version_command"> 9 <xml name="version_command">
10 <version_command><![CDATA[ 10 <version_command><![CDATA[
11 export LC_ALL=C && kraken --version 11 export LC_ALL=C && kraken --version
22 <citations> 22 <citations>
23 <citation type="doi">10.1186/gb-2014-15-3-r46</citation> 23 <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
24 </citations> 24 </citations>
25 </xml> 25 </xml>
26 <!-- See the kraken_databases.loc.sample documentation, 26 <!-- See the kraken_databases.loc.sample documentation,
27 this if statement is for backward compatibility as early 27 this if statement is for backward compatibility as early
28 versions of the wrapper assumed the UI facing field name 28 versions of the wrapper assumed the UI facing field name
29 was also part of the directory path --> 29 was also part of the directory path -->
30 <token name="@SET_DATABASE_PATH@">if [ -d '${kraken_database.fields.path}/${kraken_database.fields.name}' ]; then export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}/${kraken_database.fields.name}'; else export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}'; fi</token> 30 <token name="@SET_DATABASE_PATH@">if [ -d '${kraken_database.fields.path}/${kraken_database.fields.name}' ]; then export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}/${kraken_database.fields.name}'; else export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}'; fi</token>
31 <token name="@INPUT_DATABASE@">--db "\$KRAKEN_DEFAULT_DB"</token> 31 <token name="@INPUT_DATABASE@">--db "\$KRAKEN_DEFAULT_DB"</token>
32 </macros> 32 </macros>