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comparison macros.xml @ 13:96f11a194da9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
author iuc
date Mon, 14 Jan 2019 16:48:34 -0500
parents 33a5a81e10ee
children a44cdb52201c
comparison
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12:33a5a81e10ee 13:96f11a194da9
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@WRAPPER_VERSION@">1.2.4</token> 3 <token name="@WRAPPER_VERSION@">1.3.0</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="0.10.6_eaf8fb68">kraken</requirement> 6 <requirement type="package" version="0.10.6_eaf8fb68">kraken</requirement>
7 </requirements> 7 </requirements>
8 </xml> 8 </xml>
21 <xml name="citations"> 21 <xml name="citations">
22 <citations> 22 <citations>
23 <citation type="doi">10.1186/gb-2014-15-3-r46</citation> 23 <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
24 </citations> 24 </citations>
25 </xml> 25 </xml>
26 <token name="@INPUT_DATABASE@">--db '${kraken_database.fields.name}'</token> 26 <!-- See the kraken_databases.loc.sample documentation,
27 <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH='${kraken_database.fields.path}'</token> 27 this if statement is for backward compatibility as early
28 versions of the wrapper assumed the UI facing field name
29 was also part of the directory path -->
30 <token name="@SET_DATABASE_PATH@">if [ -d '${kraken_database.fields.path}/${kraken_database.fields.name}' ]; then export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}/${kraken_database.fields.name}'; else export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}'; fi</token>
31 <token name="@INPUT_DATABASE@">--db "\$KRAKEN_DEFAULT_DB"</token>
28 </macros> 32 </macros>