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comparison kraken.xml @ 3:2ad66362ed0f draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken/ commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:52:47 -0400
parents 898ded2d4fff
children 55d42997c0b5
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2:898ded2d4fff 3:2ad66362ed0f
54 <param name="only_classified_output" type="boolean" checked="False" truevalue="--only-classified-output" falsevalue="" label="Print no Kraken output for unclassified sequences" help="--only-classified-output"/> 54 <param name="only_classified_output" type="boolean" checked="False" truevalue="--only-classified-output" falsevalue="" label="Print no Kraken output for unclassified sequences" help="--only-classified-output"/>
55 55
56 <expand macro="input_database" /> 56 <expand macro="input_database" />
57 </inputs> 57 </inputs>
58 <outputs> 58 <outputs>
59 <data format="tabular" label="${tool.name} on ${on_string}: Classified reads" name="classified_out"> 59 <data format_source="input_sequences" label="${tool.name} on ${on_string}: Classified reads" name="classified_out">
60 <filter>(split_reads)</filter> 60 <filter>(split_reads)</filter>
61 </data> 61 </data>
62 <data format="tabular" label="${tool.name} on ${on_string}: Unclassified reads" name="unclassified_out"> 62 <data format_source="input_sequences" label="${tool.name} on ${on_string}: Unclassified reads" name="unclassified_out">
63 <filter>(split_reads)</filter> 63 <filter>(split_reads)</filter>
64 </data> 64 </data>
65 <data format="tabular" label="${tool.name} on ${on_string}: Classification" name="output" /> 65 <data format="tabular" label="${tool.name} on ${on_string}: Classification" name="output" />
66 <!--<data format="tabular" label="${tool.name} on ${on_string}: Translated classification" name="translated" />--> 66 <!--<data format="tabular" label="${tool.name} on ${on_string}: Translated classification" name="translated" />-->
67 </outputs> 67 </outputs>