Mercurial > repos > devteam > generate_pc_lda_matrix
comparison generate_matrix_for_pca_lda.xml @ 0:263a3b92368b draft default tip
Imported from capsule None
| author | devteam |
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| date | Mon, 28 Jul 2014 11:30:18 -0400 |
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| -1:000000000000 | 0:263a3b92368b |
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| 1 <tool id="generate_matrix_for_pca_and_lda1" name="Generate A Matrix" version="1.0.0"> | |
| 2 <description>for using PC and LDA</description> | |
| 3 <command interpreter="perl">generate_matrix_for_pca_lda.pl $input_1 $input_2 $output</command> | |
| 4 | |
| 5 <inputs> | |
| 6 <param format="tabular" name="input_1" type="data" label="Source file First: a matrix (samples/observations in rows and variables/features in columns)"> </param> | |
| 7 <param format="tabular" name="input_2" type="data" label="Source file Second: a table (samples/observations with response/class label)"> </param> | |
| 8 </inputs> | |
| 9 | |
| 10 <outputs> | |
| 11 <data format="tabular" name="output" /> | |
| 12 </outputs> | |
| 13 | |
| 14 <tests> | |
| 15 <test> | |
| 16 <param name="input_1" value="matrix_generator_for_pc_and_lda_input_1.tabular"/> | |
| 17 <param name="input_2" value="matrix_generator_for_pc_and_lda_input_2.tabular"/> | |
| 18 <output name="output" file="matrix_generator_for_pc_and_lda_output.tabular"/> | |
| 19 </test> | |
| 20 </tests> | |
| 21 | |
| 22 <help> | |
| 23 | |
| 24 .. class:: infomark | |
| 25 | |
| 26 **What it does** | |
| 27 | |
| 28 This tool consists of a module to generate a matrix to be used for running the Linear Discriminant Analysis as described in Carrel et al., 2006 (PMID: 17009873) | |
| 29 | |
| 30 *Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, et al. (2006) Genomic Environment Predicts Expression Patterns on the Human Inactive X Chromosome. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151* | |
| 31 | |
| 32 ----- | |
| 33 | |
| 34 **Example** | |
| 35 | |
| 36 - Input file (Source file First) | |
| 37 | |
| 38 .. image:: tools/lda/first_matrix_generator_example_file.png | |
| 39 | |
| 40 | |
| 41 - Input file (Source file Second) | |
| 42 | |
| 43 .. image:: tools/lda/second_matrix_generator_example_file.png | |
| 44 | |
| 45 | |
| 46 </help> | |
| 47 | |
| 48 </tool> |