Mercurial > repos > devteam > fastx_trimmer

diff macros.xml @ 4:748363ac106b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_trimmer commit f3f313cb59922b945ac9587ff718b231d0f8db5c
author iuc
date Fri, 17 Aug 2018 05:05:51 -0400
parents 9081fe62bd56
children b962b4efec19
line wrap: on
line diff
--- a/macros.xml	Tue May 08 12:53:09 2018 -0400
+++ b/macros.xml	Fri Aug 17 05:05:51 2018 -0400
@@ -2,7 +2,7 @@
 <macros>
     <token name="@CATS@">
         #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
-            zcat -f '$input' |
+            gunzip -c -f '$input' |
         #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'):
             bzcat -f '$input' |
         #else: