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comparison fastx_trimmer.xml @ 5:b962b4efec19 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_trimmer commit 3953b65f6b1c0336e9cadbe0792a5d3b14b5643a
author iuc
date Wed, 22 Aug 2018 11:04:02 -0400
parents 748363ac106b
children 2ff4f91ff564
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4:748363ac106b 5:b962b4efec19
8 @CATS@ fastx_trimmer -v 8 @CATS@ fastx_trimmer -v
9 -f $first 9 -f $first
10 -l $last 10 -l $last
11 -o '$output' 11 -o '$output'
12 @FQQUAL@ 12 @FQQUAL@
13 13 @GZIP@
14 #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
15 -z
16 #end if
17
18 ]]></command> 14 ]]></command>
19 <inputs> 15 <inputs>
20 <expand macro="fastx_input" /> 16 <expand macro="fastx_input" />
21 <param name="first" type="integer" value="1" label="First base to keep" /> 17 <param name="first" type="integer" value="1" label="First base to keep" />
22 <param name="last" type="integer" value="21" label="Last base to keep" /> 18 <param name="last" type="integer" value="21" label="Last base to keep" />