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comparison fastx_trimmer.xml @ 1:0288c4b3a53f

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Remove spurious version strings.
author Dave Bouvier <dave@bx.psu.edu>
date Tue, 26 Nov 2013 12:51:31 -0500
parents a7d22d34ec70
children 97f0b63ae7cf
comparison
equal deleted inserted replaced
0:a7d22d34ec70 1:0288c4b3a53f
8 -Q 33 8 -Q 33
9 #end if 9 #end if
10 </command> 10 </command>
11 11
12 <inputs> 12 <inputs>
13 <param format="fasta,fastqsolexa,fastqsanger" version="1.0.0" name="input" type="data" label="Library to clip" /> 13 <param format="fasta,fastqsolexa,fastqsanger" name="input" type="data" label="Library to clip" />
14 14
15 <param version="1.0.0" name="first" size="4" type="integer" value="1"> 15 <param name="first" size="4" type="integer" value="1">
16 <label>First base to keep</label> 16 <label>First base to keep</label>
17 </param> 17 </param>
18 18
19 <param version="1.0.0" name="last" size="4" type="integer" value="21"> 19 <param name="last" size="4" type="integer" value="21">
20 <label>Last base to keep</label> 20 <label>Last base to keep</label>
21 </param> 21 </param>
22 </inputs> 22 </inputs>
23 23
24 <tests> 24 <tests>
25 <test> 25 <test>
26 <!-- Trim a FASTA file - remove first four bases (e.g. a barcode) --> 26 <!-- Trim a FASTA file - remove first four bases (e.g. a barcode) -->
27 <param version="1.0.0" name="input" value="fastx_trimmer1.fasta" /> 27 <param name="input" value="fastx_trimmer1.fasta" />
28 <param version="1.0.0" name="first" value="5"/> 28 <param name="first" value="5"/>
29 <param version="1.0.0" name="last" value="36"/> 29 <param name="last" value="36"/>
30 <output version="1.0.0" name="output" file="fastx_trimmer1.out" /> 30 <output name="output" file="fastx_trimmer1.out" />
31 </test> 31 </test>
32 <test> 32 <test>
33 <!-- Trim a FASTQ file - remove last 9 bases (e.g. keep only miRNA length sequences) --> 33 <!-- Trim a FASTQ file - remove last 9 bases (e.g. keep only miRNA length sequences) -->
34 <param version="1.0.0" name="input" value="fastx_trimmer2.fastq" ftype="fastqsolexa"/> 34 <param name="input" value="fastx_trimmer2.fastq" ftype="fastqsolexa"/>
35 <param version="1.0.0" name="first" value="1"/> 35 <param name="first" value="1"/>
36 <param version="1.0.0" name="last" value="27"/> 36 <param name="last" value="27"/>
37 <output version="1.0.0" name="output" file="fastx_trimmer2.out" /> 37 <output name="output" file="fastx_trimmer2.out" />
38 </test> 38 </test>
39 </tests> 39 </tests>
40 40
41 <outputs> 41 <outputs>
42 <data format="input" version="1.0.0" name="output" metadata_source="input" /> 42 <data format="input" name="output" metadata_source="input" />
43 </outputs> 43 </outputs>
44 <help> 44 <help>
45 **What it does** 45 **What it does**
46 46
47 This tool trims (cut bases from) sequences in a FASTA/Q file. 47 This tool trims (cut bases from) sequences in a FASTA/Q file.