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comparison macros.xml @ 4:64203edc4ec1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_reverse_complement commit 3953b65f6b1c0336e9cadbe0792a5d3b14b5643a
author iuc
date Wed, 22 Aug 2018 11:03:42 -0400
parents 9d06c848a628
children a4167b7c73cb
comparison
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3:9d06c848a628 4:64203edc4ec1
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@CATS@"> 3 <token name="@CATS@">
4 #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): 4 #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
5 zcat -f '$input' | 5 gunzip -c -f '$input' |
6 #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): 6 #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'):
7 bzcat -f '$input' | 7 bzcat -f '$input' |
8 #else: 8 #else:
9 cat '$input' | 9 cat '$input' |
10 #end if 10 #end if
13 <![CDATA[ 13 <![CDATA[
14 #if $input.is_of_type('fastqsanger', 'fastqsanger.gz', 'fastqsanger.bz2'): 14 #if $input.is_of_type('fastqsanger', 'fastqsanger.gz', 'fastqsanger.bz2'):
15 -Q 33 15 -Q 33
16 #elif $input.is_of_type('fastqsolexa', 'fastqsolexa.gz', 'fastqsolexa.bz2', 'fastqillumina', 'fastqillumina.gz', 'fastqillumina.bz2'): 16 #elif $input.is_of_type('fastqsolexa', 'fastqsolexa.gz', 'fastqsolexa.bz2', 'fastqillumina', 'fastqillumina.gz', 'fastqillumina.bz2'):
17 -Q 64 17 -Q 64
18 #end if
19 ]]>
20 </token>
21 <token name="@GZIP@">
22 <![CDATA[
23 #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
24 -z
18 #end if 25 #end if
19 ]]> 26 ]]>
20 </token> 27 </token>
21 <xml name="requirements"> 28 <xml name="requirements">
22 <requirements> 29 <requirements>