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comparison fastx_clipper.xml @ 5:40200bfa25cd draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_clipper commit 4c002e52261da2e7609735883d91fa1610ce6ce7"
author iuc
date Thu, 30 Jan 2020 18:27:01 +0000
parents 397201fefb9e
children e797fa738289
comparison
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4:397201fefb9e 5:40200bfa25cd
1 <tool id="cshl_fastx_clipper" name="Clip" version="1.0.3"> 1 <tool id="cshl_fastx_clipper" name="Clip" version="1.0.3+galaxy0">
2 <description>adapter sequences</description> 2 <description>adapter sequences</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements">
7 <requirement type="package" version="1.0.8">bzip2</requirement>
8 </expand>
7 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
8 @CATS@ fastx_clipper 10 @CATS@ fastx_clipper
9 -l $minlength 11 -l $minlength
10 -a '$clip_source.clip_sequence' 12 -a '$clip_source.clip_sequence'
11 -d $keepdelta 13 -d $keepdelta
12 -o '$output'
13 -v 14 -v
14 $KEEP_N 15 $KEEP_N
15 $DISCARD_OPTIONS 16 $DISCARD_OPTIONS
16 @FQQUAL@ 17 @FQQUAL@
17 @GZIP@ 18 @GZIP@ > '$output'
18 ]]></command> 19 ]]></command>
19 20
20 <inputs> 21 <inputs>
21 <expand macro="fastx_input" /> 22 <expand macro="fastx_input" />
22 23