Mercurial > repos > devteam > fastx_barcode_splitter

comparison fastx_barcode_splitter.xml @ 2:1a20fbb8bad8 draft

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author devteam
date Tue, 03 Jun 2014 14:50:06 -0400
parents 7b5eb2503f6d
children 3b0cd3132ddc
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1:7b5eb2503f6d 2:1a20fbb8bad8
26 <param name="BARCODE" value="fastx_barcode_splitter1.txt" /> 26 <param name="BARCODE" value="fastx_barcode_splitter1.txt" />
27 <param name="input" value="fastx_barcode_splitter1.fastq" ftype="fastqsolexa" /> 27 <param name="input" value="fastx_barcode_splitter1.fastq" ftype="fastqsolexa" />
28 <param name="EOL" value="Start of sequence (5' end)" /> 28 <param name="EOL" value="Start of sequence (5' end)" />
29 <param name="mismatches" value="2" /> 29 <param name="mismatches" value="2" />
30 <param name="partial" value="0" /> 30 <param name="partial" value="0" />
31 <output name="output" file="fastx_barcode_splitter1.out" /> 31 <param name="output" file="fastx_barcode_splitter1.out" />
32 </test> 32 </test>
33 </tests> 33 </tests>
34 34
35 <outputs> 35 <outputs>
36 <data format="html" name="output" /> 36 <data format="html" name="output" />
62 62
63 The output of this tool is an HTML file, displaying the split counts and the file locations. 63 The output of this tool is an HTML file, displaying the split counts and the file locations.
64 64
65 **Output Example** 65 **Output Example**
66 66
67 .. image:: ${static_path}/fastx_icons/barcode_splitter_output_example.png 67 .. image:: barcode_splitter_output_example.png
68 68
69 69
70 ------ 70 ------
71 71
72 This tool is based on `FASTX-toolkit`__ by Assaf Gordon. 72 This tool is based on `FASTX-toolkit`__ by Assaf Gordon.