Mercurial > repos > devteam > fastqtofasta
diff fastq_to_fasta.xml @ 7:1ed39263173b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastqtofasta commit a5766d27dcddd1891766476a913d0eae1ec7a3c9
| author | iuc |
|---|---|
| date | Sun, 23 Nov 2025 17:49:56 +0000 |
| parents | 6156c02cd993 |
| children |
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--- a/fastq_to_fasta.xml Fri Oct 04 10:34:07 2024 +0000 +++ b/fastq_to_fasta.xml Sun Nov 23 17:49:56 2025 +0000 @@ -14,7 +14,7 @@ gx-fastq-to-fasta '$input_file' '$output_file' '${input_file.extension[len('fastq'):]}' ]]></command> <inputs> - <param name="input_file" type="data" format="fastq,fastq.gz,fastq.bz2" label="FASTQ file to convert" /> + <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ file to convert" /> </inputs> <outputs> <data name="output_file" format="fasta" /> @@ -25,6 +25,11 @@ <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" /> <output name="output_file" file="fastq_to_fasta_python_1.out" /> </test> + <!-- basic test --> + <test> + <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger.gz" ftype="fastqsanger.gz" /> + <output name="output_file" file="fastq_to_fasta_python_1.out" /> + </test> <!-- color space test --> <test> <param name="input_file" value="sanger_full_range_as_cssanger.fastqcssanger" ftype="fastqcssanger" />