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comparison fastq_to_fasta.xml @ 7:1ed39263173b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastqtofasta commit a5766d27dcddd1891766476a913d0eae1ec7a3c9
author iuc
date Sun, 23 Nov 2025 17:49:56 +0000
parents 6156c02cd993
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6:6156c02cd993 7:1ed39263173b
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command><![CDATA[ 13 <command><![CDATA[
14 gx-fastq-to-fasta '$input_file' '$output_file' '${input_file.extension[len('fastq'):]}' 14 gx-fastq-to-fasta '$input_file' '$output_file' '${input_file.extension[len('fastq'):]}'
15 ]]></command> 15 ]]></command>
16 <inputs> 16 <inputs>
17 <param name="input_file" type="data" format="fastq,fastq.gz,fastq.bz2" label="FASTQ file to convert" /> 17 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ file to convert" />
18 </inputs> 18 </inputs>
19 <outputs> 19 <outputs>
20 <data name="output_file" format="fasta" /> 20 <data name="output_file" format="fasta" />
21 </outputs> 21 </outputs>
22 <tests> 22 <tests>
23 <!-- basic test --> 23 <!-- basic test -->
24 <test> 24 <test>
25 <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" /> 25 <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" />
26 <output name="output_file" file="fastq_to_fasta_python_1.out" />
27 </test>
28 <!-- basic test -->
29 <test>
30 <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger.gz" ftype="fastqsanger.gz" />
26 <output name="output_file" file="fastq_to_fasta_python_1.out" /> 31 <output name="output_file" file="fastq_to_fasta_python_1.out" />
27 </test> 32 </test>
28 <!-- color space test --> 33 <!-- color space test -->
29 <test> 34 <test>
30 <param name="input_file" value="sanger_full_range_as_cssanger.fastqcssanger" ftype="fastqcssanger" /> 35 <param name="input_file" value="sanger_full_range_as_cssanger.fastqcssanger" ftype="fastqcssanger" />