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comparison test-data/fastqc_data_hisat.txt @ 22:a35575615aa4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 9aa395df821f0d3607867c83536ac97f9ffe8b29
author iuc
date Thu, 08 Jun 2023 20:01:52 +0000
parents b44429593dd8
children
comparison
equal deleted inserted replaced
21:b44429593dd8 22:a35575615aa4
1 ##FastQC 0.11.9 1 ##FastQC 0.12.1
2 >>Basic Statistics pass 2 >>Basic Statistics pass
3 #Measure Value 3 #Measure Value
4 Filename hisat_output_1_bam 4 Filename hisat_output_1_bam
5 File type Conventional base calls 5 File type Conventional base calls
6 Encoding Sanger / Illumina 1.9 6 Encoding Sanger / Illumina 1.9
7 Total Sequences 20 7 Total Sequences 20
8 Total Bases 1.4 kbp
8 Sequences flagged as poor quality 0 9 Sequences flagged as poor quality 0
9 Sequence length 70 10 Sequence length 70
10 %GC 43 11 %GC 43
11 >>END_MODULE 12 >>END_MODULE
12 >>Per base sequence quality pass 13 >>Per base sequence quality pass
340 #Length Count 341 #Length Count
341 70 20.0 342 70 20.0
342 >>END_MODULE 343 >>END_MODULE
343 >>Sequence Duplication Levels pass 344 >>Sequence Duplication Levels pass
344 #Total Deduplicated Percentage 100.0 345 #Total Deduplicated Percentage 100.0
345 #Duplication Level Percentage of deduplicated Percentage of total 346 #Duplication Level Percentage of total
346 1 100.0 100.0 347 1 100.0
347 2 0.0 0.0 348 2 0.0
348 3 0.0 0.0 349 3 0.0
349 4 0.0 0.0 350 4 0.0
350 5 0.0 0.0 351 5 0.0
351 6 0.0 0.0 352 6 0.0
352 7 0.0 0.0 353 7 0.0
353 8 0.0 0.0 354 8 0.0
354 9 0.0 0.0 355 9 0.0
355 >10 0.0 0.0 356 >10 0.0
356 >50 0.0 0.0 357 >50 0.0
357 >100 0.0 0.0 358 >100 0.0
358 >500 0.0 0.0 359 >500 0.0
359 >1k 0.0 0.0 360 >1k 0.0
360 >5k 0.0 0.0 361 >5k 0.0
361 >10k+ 0.0 0.0 362 >10k+ 0.0
362 >>END_MODULE 363 >>END_MODULE
363 >>Overrepresented sequences fail 364 >>Overrepresented sequences fail
364 #Sequence Count Percentage Possible Source 365 #Sequence Count Percentage Possible Source
365 GCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCCTC 1 5.0 No Hit 366 CCTTTCGCCATCAACTAACGATTCTGTCAAAAACTGACGCGTTGGATGAG 1 5.0 No Hit
366 CCATACAAAACAGGGTCGCCAGCAATATCGGTATAAGTCAAAGCACCTTTAGCGTTAAGGTACTGAATCT 1 5.0 No Hit 367 TGGCGCTCTCCGTCTTTCTCCATTTCGTCGTGGCCTTGCTATTGACTCTA 1 5.0 No Hit
367 TAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTCAAGCGCCGAGGATGCGTGACCGT 1 5.0 No Hit 368 ACCATAAACGCAAGCCTCAACGCAGCGACGAGCACGAGAGCGGTCAGTAG 1 5.0 No Hit
368 CTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCA 1 5.0 No Hit 369 TGTTTTCCGTAAATTCAGCGCCTTCCATGATGCGACAGGCCGTTTGAATG 1 5.0 No Hit
369 CTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAA 1 5.0 No Hit 370 CTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGT 1 5.0 No Hit
370 TCTGCGTTTGCTGATGAACTAAGTCAACCTCAGCACTAACCTTGCGAGTCATTTCATTGATTTGGTCATT 1 5.0 No Hit 371 TCTGCGTTTGCTGATGAACTAAGTCAACCTCAGCACTAACCTTGCGAGTC 1 5.0 No Hit
371 GCGTTAAGGTACTGAATCTCTTTAGTCGCAGTAGGCGGAAAACGAACAAGCGCAAGAGTAAACATAGTGC 1 5.0 No Hit 372 CCATACAAAACAGGGTCGCCAGCAATATCGGTATAAGTCAAAGCACCTTT 1 5.0 No Hit
372 CTGAATGGAATTAAGAAAACCACCAATACCAGCATTAACCTTCAAACTATCAAAATATAACGTTGACGAT 1 5.0 No Hit 373 TAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTCAAG 1 5.0 No Hit
373 CTCAAATCCGGCGTCAACCATACCAGCATAGGAAGCATCAGCACCAGCACGCTCCCAAGCATTAATCTCA 1 5.0 No Hit 374 CAAATTAGCATAAGCAGCTTGCAGACCCATAATGTCAATAGATGTGGTAG 1 5.0 No Hit
374 CAAATTAGCATAAGCAGCTTGCAGACCCATAATGTCAATAGATGTGGTAGAAGTCGTCATTTGGCTAGAA 1 5.0 No Hit 375 GCGTTAAGGTACTGAATCTCTTTAGTCGCAGTAGGCGGAAAACGAACAAG 1 5.0 No Hit
375 GTGAAATTTCTAGGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCA 1 5.0 No Hit 376 CTGAATGGAATTAAGAAAACCACCAATACCAGCATTAACCTTCAAACTAT 1 5.0 No Hit
376 TGTTTTCCGTAAATTCAGCGCCTTCCATGATGCGACAGGCCGTTTGAATGTTGACGGGATGAACATAATA 1 5.0 No Hit 377 GCGACCATTCAAAGGATAAACATCATAGGCAGTCGGGAGGGTAGTCGGAA 1 5.0 No Hit
377 CCTTTCGCCATCAACTAACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCT 1 5.0 No Hit 378 GTGAAATTTCTAGGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAG 1 5.0 No Hit
378 TGGCGCTCTCCGTCTTTCTCCATTTCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTT 1 5.0 No Hit 379 CTCAAATCCGGCGTCAACCATACCAGCATAGGAAGCATCAGCACCAGCAC 1 5.0 No Hit
379 GCGACCATTCAAAGGATAAACATCATAGGCAGTCGGGAGGGTAGTCGGAACCGACGAAGACTCAAAGCGA 1 5.0 No Hit 380 TTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACC 1 5.0 No Hit
380 TTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGTAATTACTACTGCTTGTTTACGAAT 1 5.0 No Hit 381 CTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATA 1 5.0 No Hit
381 TTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAG 1 5.0 No Hit 382 TTAGGTGTGTGTAAAACAGGTGCCGAAGAAGCTGGATTAACAGAATTGAG 1 5.0 No Hit
382 CTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGGTAAAAAAT 1 5.0 No Hit 383 GCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGA 1 5.0 No Hit
383 ACCATAAACGCAAGCCTCAACGCAGCGACGAGCACGAGAGCGGTCAGTAGCAATCCAAACTTTGTTACTC 1 5.0 No Hit 384 TTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGTAATT 1 5.0 No Hit
384 TTAGGTGTGTGTAAAACAGGTGCCGAAGAAGCTGGATTAACAGAATTGAGAACCAGCTTATCAGAAAAAA 1 5.0 No Hit 385 CTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAA 1 5.0 No Hit
385 >>END_MODULE 386 >>END_MODULE
386 >>Adapter Content pass 387 >>Adapter Content pass
387 #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 388 #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence PolyA PolyG
388 1 0.0 0.0 0.0 0.0 0.0 389 1 0.0 0.0 0.0 0.0 0.0 0.0
389 2 0.0 0.0 0.0 0.0 0.0 390 2 0.0 0.0 0.0 0.0 0.0 0.0
390 3 0.0 0.0 0.0 0.0 0.0 391 3 0.0 0.0 0.0 0.0 0.0 0.0
391 4 0.0 0.0 0.0 0.0 0.0 392 4 0.0 0.0 0.0 0.0 0.0 0.0
392 5 0.0 0.0 0.0 0.0 0.0 393 5 0.0 0.0 0.0 0.0 0.0 0.0
393 6 0.0 0.0 0.0 0.0 0.0 394 6 0.0 0.0 0.0 0.0 0.0 0.0
394 7 0.0 0.0 0.0 0.0 0.0 395 7 0.0 0.0 0.0 0.0 0.0 0.0
395 8 0.0 0.0 0.0 0.0 0.0 396 8 0.0 0.0 0.0 0.0 0.0 0.0
396 9 0.0 0.0 0.0 0.0 0.0 397 9 0.0 0.0 0.0 0.0 0.0 0.0
397 10 0.0 0.0 0.0 0.0 0.0 398 10 0.0 0.0 0.0 0.0 0.0 0.0
398 11 0.0 0.0 0.0 0.0 0.0 399 11 0.0 0.0 0.0 0.0 0.0 0.0
399 12 0.0 0.0 0.0 0.0 0.0 400 12 0.0 0.0 0.0 0.0 0.0 0.0
400 13 0.0 0.0 0.0 0.0 0.0 401 13 0.0 0.0 0.0 0.0 0.0 0.0
401 14 0.0 0.0 0.0 0.0 0.0 402 14 0.0 0.0 0.0 0.0 0.0 0.0
402 15 0.0 0.0 0.0 0.0 0.0 403 15 0.0 0.0 0.0 0.0 0.0 0.0
403 16 0.0 0.0 0.0 0.0 0.0 404 16 0.0 0.0 0.0 0.0 0.0 0.0
404 17 0.0 0.0 0.0 0.0 0.0 405 17 0.0 0.0 0.0 0.0 0.0 0.0
405 18 0.0 0.0 0.0 0.0 0.0 406 18 0.0 0.0 0.0 0.0 0.0 0.0
406 19 0.0 0.0 0.0 0.0 0.0 407 19 0.0 0.0 0.0 0.0 0.0 0.0
407 20 0.0 0.0 0.0 0.0 0.0 408 20 0.0 0.0 0.0 0.0 0.0 0.0
408 21 0.0 0.0 0.0 0.0 0.0 409 21 0.0 0.0 0.0 0.0 0.0 0.0
409 22 0.0 0.0 0.0 0.0 0.0 410 22 0.0 0.0 0.0 0.0 0.0 0.0
410 23 0.0 0.0 0.0 0.0 0.0 411 23 0.0 0.0 0.0 0.0 0.0 0.0
411 24 0.0 0.0 0.0 0.0 0.0 412 24 0.0 0.0 0.0 0.0 0.0 0.0
412 25 0.0 0.0 0.0 0.0 0.0 413 25 0.0 0.0 0.0 0.0 0.0 0.0
413 26 0.0 0.0 0.0 0.0 0.0 414 26 0.0 0.0 0.0 0.0 0.0 0.0
414 27 0.0 0.0 0.0 0.0 0.0 415 27 0.0 0.0 0.0 0.0 0.0 0.0
415 28 0.0 0.0 0.0 0.0 0.0 416 28 0.0 0.0 0.0 0.0 0.0 0.0
416 29 0.0 0.0 0.0 0.0 0.0 417 29 0.0 0.0 0.0 0.0 0.0 0.0
417 30 0.0 0.0 0.0 0.0 0.0 418 30 0.0 0.0 0.0 0.0 0.0 0.0
418 31 0.0 0.0 0.0 0.0 0.0 419 31 0.0 0.0 0.0 0.0 0.0 0.0
419 32 0.0 0.0 0.0 0.0 0.0 420 32 0.0 0.0 0.0 0.0 0.0 0.0
420 33 0.0 0.0 0.0 0.0 0.0 421 33 0.0 0.0 0.0 0.0 0.0 0.0
421 34 0.0 0.0 0.0 0.0 0.0 422 34 0.0 0.0 0.0 0.0 0.0 0.0
422 35 0.0 0.0 0.0 0.0 0.0 423 35 0.0 0.0 0.0 0.0 0.0 0.0
423 36 0.0 0.0 0.0 0.0 0.0 424 36 0.0 0.0 0.0 0.0 0.0 0.0
424 37 0.0 0.0 0.0 0.0 0.0 425 37 0.0 0.0 0.0 0.0 0.0 0.0
425 38 0.0 0.0 0.0 0.0 0.0 426 38 0.0 0.0 0.0 0.0 0.0 0.0
426 39 0.0 0.0 0.0 0.0 0.0 427 39 0.0 0.0 0.0 0.0 0.0 0.0
427 40 0.0 0.0 0.0 0.0 0.0 428 40 0.0 0.0 0.0 0.0 0.0 0.0
428 41 0.0 0.0 0.0 0.0 0.0 429 41 0.0 0.0 0.0 0.0 0.0 0.0
429 42 0.0 0.0 0.0 0.0 0.0 430 42 0.0 0.0 0.0 0.0 0.0 0.0
430 43 0.0 0.0 0.0 0.0 0.0 431 43 0.0 0.0 0.0 0.0 0.0 0.0
431 44 0.0 0.0 0.0 0.0 0.0 432 44 0.0 0.0 0.0 0.0 0.0 0.0
432 45 0.0 0.0 0.0 0.0 0.0 433 45 0.0 0.0 0.0 0.0 0.0 0.0
433 46 0.0 0.0 0.0 0.0 0.0 434 46 0.0 0.0 0.0 0.0 0.0 0.0
434 47 0.0 0.0 0.0 0.0 0.0 435 47 0.0 0.0 0.0 0.0 0.0 0.0
435 48 0.0 0.0 0.0 0.0 0.0 436 48 0.0 0.0 0.0 0.0 0.0 0.0
436 49 0.0 0.0 0.0 0.0 0.0 437 49 0.0 0.0 0.0 0.0 0.0 0.0
437 50 0.0 0.0 0.0 0.0 0.0 438 50 0.0 0.0 0.0 0.0 0.0 0.0
438 51 0.0 0.0 0.0 0.0 0.0 439 51 0.0 0.0 0.0 0.0 0.0 0.0
439 52 0.0 0.0 0.0 0.0 0.0 440 52 0.0 0.0 0.0 0.0 0.0 0.0
440 53 0.0 0.0 0.0 0.0 0.0 441 53 0.0 0.0 0.0 0.0 0.0 0.0
441 54 0.0 0.0 0.0 0.0 0.0 442 54 0.0 0.0 0.0 0.0 0.0 0.0
442 55 0.0 0.0 0.0 0.0 0.0 443 55 0.0 0.0 0.0 0.0 0.0 0.0
443 56 0.0 0.0 0.0 0.0 0.0 444 56 0.0 0.0 0.0 0.0 0.0 0.0
444 57 0.0 0.0 0.0 0.0 0.0 445 57 0.0 0.0 0.0 0.0 0.0 0.0
445 58 0.0 0.0 0.0 0.0 0.0 446 58 0.0 0.0 0.0 0.0 0.0 0.0
446 59 0.0 0.0 0.0 0.0 0.0 447 59 0.0 0.0 0.0 0.0 0.0 0.0
447 >>END_MODULE 448 >>END_MODULE