Mercurial > repos > devteam > fastq_trimmer_by_quality

comparison fastq_trimmer_by_quality.xml @ 5:de3d8685fe42 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastq_trimmer_by_quality commit cd1ed08574b749eee2a3f6e6151dbb0c8ca15bbf"
author devteam
date Sun, 01 Mar 2020 12:23:48 +0000
parents 8b85db5a62e6
children
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4:8b85db5a62e6 5:de3d8685fe42
1 <tool id="fastq_quality_trimmer" name="FASTQ Quality Trimmer" version="1.1.1"> 1 <tool id="fastq_quality_trimmer" name="FASTQ Quality Trimmer" version="1.1.5" profile="16.04">
2 <description>by sliding window</description> 2 <description>by sliding window</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> 4 <requirement type="package" version="1.1.5">galaxy_sequence_utils</requirement>
5 </requirements> 5 </requirements>
6 <command><![CDATA[ 6 <command><![CDATA[
7 gx-fastq-trimmer-by-quality '$input_file' '$output_file' -f '${input_file.extension[len('fastq'):]}' -s $window_size 7 gx-fastq-trimmer-by-quality '$input_file' '$output_file' -f '${input_file.extension[len('fastq'):]}' -s $window_size
8 -t $step_size -e $trim_ends -a $aggregation_action -x $exclude_count -c '$score_comparison' -q $quality_score 8 -t $step_size -e $trim_ends -a $aggregation_action -x $exclude_count -c '$score_comparison' -q $quality_score
9 #if $keep_zero_length: 9 #if $keep_zero_length: