# HG changeset patch
# User devteam
# Date 1444754694 14400
# Node ID 3be753901f6e47e6606ae66f79eccdab33a3d5ef
# Parent  feb5479a48ff2f339b6526ac86f4d179f6b3222d
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734

diff -r feb5479a48ff -r 3be753901f6e fastq_trimmer.xml
--- a/fastq_trimmer.xml	Thu Jan 23 12:31:36 2014 -0500
+++ b/fastq_trimmer.xml	Tue Oct 13 12:44:54 2015 -0400
@@ -81,6 +81,8 @@
     </test>
   </tests>
   <help>
+**What is does**
+    
 This tool allows you to trim the ends of reads.
 
 You can specify either absolute or percent-based offsets. Offsets are calculated, starting at 0, from the respective end to be trimmed. When using the percent-based method, offsets are rounded to the nearest integer. 
@@ -114,10 +116,10 @@
 
 ------
 
-**Citation**
-
-If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. &lt;http://www.ncbi.nlm.nih.gov/pubmed/20562416&gt;`_
-
-
   </help>
+  
+  <citations>
+    <citation type="doi">10.1093/bioinformatics/btq281</citation>
+  </citations>
+  
 </tool>
diff -r feb5479a48ff -r 3be753901f6e tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jan 23 12:31:36 2014 -0500
+++ b/tool_dependencies.xml	Tue Oct 13 12:44:54 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="galaxy_sequence_utils" version="1.0.0">
-      <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>